class Infernal < Formula homepage "http://infernal.janelia.org/" # doi "10.1093/bioinformatics/btp157" # tag "bioinformatics" url "http://eddylab.org/software/infernal/infernal-1.1.1.tar.gz" sha256 "9f18ed3ce5ba738db268521c2ac9781449855687016dd50cfcb7fb479a5e319a" bottle do cellar :any sha256 "b0ae6239bf56e3f11ccdb8c1534c733adfbf1708b4e7ab563664caacab5e492a" => :yosemite sha256 "1795cdba9ce8f61ad3b46f748015e9a9a2a124be9e681dcef407f3fd310c0a09" => :mavericks sha256 "d132b98769966008d8c320a6d80d50636b95b3f4d6d05bd51986f22e2f5f0e94" => :mountain_lion end deprecated_option "check" => "with-check" option "with-check", "Run the test suite (`make check`). Takes a couple of minutes." def install system "./configure", "--prefix=#{prefix}" system "make" system "make", "check" if build.with? "check" system "make", "install" end test do system "cmsearch", "-h" end end