#! /usr/bin/env python # Copyright CEA and IFR 49 (2000-2005) # # This software and supporting documentation were developed by # CEA/DSV/SHFJ and IFR 49 # 4 place du General Leclerc # 91401 Orsay cedex # France # # This software is governed by the CeCILL license version 2 under # French law and abiding by the rules of distribution of free software. # You can use, modify and/or redistribute the software under the # terms of the CeCILL license version 2 as circulated by CEA, CNRS # and INRIA at the following URL "http://www.cecill.info". # # As a counterpart to the access to the source code and rights to copy, # modify and redistribute granted by the license, users are provided only # with a limited warranty and the software's author, the holder of the # economic rights, and the successive licensors have only limited # liability. # # In this respect, the user's attention is drawn to the risks associated # with loading, using, modifying and/or developing or reproducing the # software by the user in light of its specific status of free software, # that may mean that it is complicated to manipulate, and that also # therefore means that it is reserved for developers and experienced # professionals having in-depth computer knowledge. Users are therefore # encouraged to load and test the software's suitability as regards their # requirements in conditions enabling the security of their systems and/or # data to be ensured and, more generally, to use and operate it in the # same conditions as regards security. # # The fact that you are presently reading this means that you have had # knowledge of the CeCILL license version 2 and that you accept its terms. import sys,os.path # Run feature selection with low priority # Not very nice :( # find brainvisa path in a manual way, latter use "brainvisa-config" # and source neuroconfig to set Rexecutable, Roptions & bvPath # because actually this works only on UNIX pyBinPath=os.path.realpath(sys.argv[0]) RBinPath =os.path.join(os.path.dirname(pyBinPath),'run_featSelect.R') initPath=os.path.abspath(os.path.dirname(pyBinPath)+'/../lib/mlInit.R') Rexecutable = 'R' Roptions = '--vanilla --slave -q --args' Rcmd='nice -n 19 '+Rexecutable + ' ' + Roptions +' <'+RBinPath+' --initFile '+initPath for arg in sys.argv[1:len( sys.argv)] : if arg=='--help' or arg=='-h':arg='--HELP' Rcmd=Rcmd+' '+arg os.system(Rcmd) ##run_featSelect.py --config config_file_exemple.R --data Merge/arti_correlated_100.dat --class class