#  This software and supporting documentation are distributed by
#      Institut Federatif de Recherche 49
#      CEA/NeuroSpin, Batiment 145,
#      91191 Gif-sur-Yvette cedex
#      France
#
# This software is governed by the CeCILL license version 2 under
# French law and abiding by the rules of distribution of free software.
# You can  use, modify and/or redistribute the software under the 
# terms of the CeCILL license version 2 as circulated by CEA, CNRS
# and INRIA at the following URL "http://www.cecill.info". 
#
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include( 'base' )

#------------------------------------------------------------------------------
# New referentials and transformations organization
#------------------------------------------------------------------------------

allKindsOfRefAndTrans = (
  '*', SetType( 'Referential' ),
  '*', SetType( 'Transformation matrix' ),
)

# The "registration" directory in each subject contains:
#   - all the referentials related to this subjects
#   - all the transformations that links two referetials
#     from this directory or from the common referentials
#     directory (in "shared" directory)
insertFirst( '{protocol}/{subject}',
  'registration', SetType( 'Registration Directory' ),
             SetContent( *allKindsOfRefAndTrans ),
)

# The "registration" directory in each protocol contains
# all the referentials and transformations for cross-subject
# registration.
insertFirst( '{protocol}',
  'registration', SetType( 'Registration Directory' ), 
  SetContent( *allKindsOfRefAndTrans ),
)

#------------------------------------------------------------------------------
# Old transformations organization
#------------------------------------------------------------------------------

recal_content = (
    "ref_TO_test", SetType( 'REF to TEST Transformation matrix' ), 
      SetWeakAttr( 'from', 'REF' ), SetWeakAttr( 'to', 'TEST' ),
    "test_TO_ref", SetType( 'TEST to REF Transformation matrix' ), 
      SetWeakAttr( 'from', 'TEST' ), SetWeakAttr( 'to', 'REF' ),
     # --comment to avoid ambiguity # "<subject>_TO_talairach", SetType( 'RECAL Transformation matrix' ),
    "rs_recal_<subject>", SetType( 'Resamp Spline Image' ),
)


insert( '{protocol}/{subject}',
  "recal",
    apply( SetContent, recal_content )# + ( '{acquisition}', apply( SetContent, recal_content ), ) ),
)