/*
Copyright (C) 2003-2015 John W. Eaton
This file is part of Octave.
Octave is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation; either version 3 of the License, or (at your
option) any later version.
Octave is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
for more details.
You should have received a copy of the GNU General Public License
along with Octave; see the file COPYING. If not, see
.
*/
#if !defined (octave_ls_hdf5_h)
#define octave_ls_hdf5_h 1
#if defined (HAVE_HDF5)
#include "oct-hdf5.h"
// first, we need to define our own dummy stream subclass, since
// HDF5 needs to do its own file i/o
// hdf5_fstreambase is used for both input and output streams, modeled
// on the fstreambase class in
class hdf5_fstreambase : virtual public std::ios
{
public:
// HDF5 uses an "id" to refer to an open file
hid_t file_id;
// keep track of current item index in the file
int current_item;
hdf5_fstreambase () : file_id (-1), current_item () { }
~hdf5_fstreambase () { close (); }
hdf5_fstreambase (const char *name, int mode, int /* prot */ = 0)
: file_id (-1), current_item (-1)
{
if (mode & std::ios::in)
file_id = H5Fopen (name, H5F_ACC_RDONLY, H5P_DEFAULT);
else if (mode & std::ios::out)
{
if (mode & std::ios::app && H5Fis_hdf5 (name) > 0)
file_id = H5Fopen (name, H5F_ACC_RDWR, H5P_DEFAULT);
else
file_id = H5Fcreate (name, H5F_ACC_TRUNC, H5P_DEFAULT,
H5P_DEFAULT);
}
if (file_id < 0)
std::ios::setstate (std::ios::badbit);
current_item = 0;
}
void close ()
{
if (file_id >= 0)
{
if (H5Fclose (file_id) < 0)
std::ios::setstate (std::ios::badbit);
file_id = -1;
}
}
void open (const char *name, int mode, int)
{
clear ();
if (mode & std::ios::in)
file_id = H5Fopen (name, H5F_ACC_RDONLY, H5P_DEFAULT);
else if (mode & std::ios::out)
{
if (mode & std::ios::app && H5Fis_hdf5 (name) > 0)
file_id = H5Fopen (name, H5F_ACC_RDWR, H5P_DEFAULT);
else
file_id = H5Fcreate (name, H5F_ACC_TRUNC, H5P_DEFAULT,
H5P_DEFAULT);
}
if (file_id < 0)
std::ios::setstate (std::ios::badbit);
current_item = 0;
}
};
// input and output streams, subclassing istream and ostream
// so that we can pass them for stream parameters in the functions below.
class hdf5_ifstream : public hdf5_fstreambase, public std::istream
{
public:
hdf5_ifstream () : hdf5_fstreambase (), std::istream (0) { }
hdf5_ifstream (const char *name, int mode = std::ios::in|std::ios::binary,
int prot = 0)
: hdf5_fstreambase (name, mode, prot), std::istream (0) { }
void open (const char *name, int mode = std::ios::in|std::ios::binary,
int prot = 0)
{ hdf5_fstreambase::open (name, mode, prot); }
};
class hdf5_ofstream : public hdf5_fstreambase, public std::ostream
{
public:
hdf5_ofstream () : hdf5_fstreambase (), std::ostream (0) { }
hdf5_ofstream (const char *name, int mode = std::ios::out|std::ios::binary,
int prot = 0)
: hdf5_fstreambase (name, mode, prot), std::ostream (0) { }
void open (const char *name, int mode = std::ios::out|std::ios::binary,
int prot = 0)
{ hdf5_fstreambase::open (name, mode, prot); }
};
// Callback data structure for passing data to hdf5_read_next_data, below.
struct
hdf5_callback_data
{
hdf5_callback_data (void)
: name (), global (false), tc (), doc () { }
// the following fields are set by hdf5_read_data on successful return:
// the name of the variable
std::string name;
// whether it is global
bool global;
// the value of the variable, in Octave form
octave_value tc;
// a documentation string (NULL if none)
std::string doc;
};
#if HAVE_HDF5_INT2FLOAT_CONVERSIONS
extern OCTINTERP_API hid_t
save_type_to_hdf5 (save_type st)
#endif
extern OCTINTERP_API hid_t
hdf5_make_complex_type (hid_t num_type);
extern OCTINTERP_API bool
hdf5_types_compatible (hid_t t1, hid_t t2);
extern OCTINTERP_API herr_t
hdf5_read_next_data (hid_t group_id, const char *name, void *dv);
extern OCTINTERP_API bool
add_hdf5_data (hid_t loc_id, const octave_value& tc,
const std::string& name, const std::string& doc,
bool mark_as_global, bool save_as_floats);
extern OCTINTERP_API int
save_hdf5_empty (hid_t loc_id, const char *name, const dim_vector d);
extern OCTINTERP_API int
load_hdf5_empty (hid_t loc_id, const char *name, dim_vector &d);
extern OCTINTERP_API std::string
read_hdf5_data (std::istream& is, const std::string& filename, bool& global,
octave_value& tc, std::string& doc,
const string_vector& argv, int argv_idx, int argc);
extern OCTINTERP_API bool
save_hdf5_data (std::ostream& os, const octave_value& tc,
const std::string& name, const std::string& doc,
bool mark_as_global, bool save_as_floats);
extern OCTINTERP_API bool
hdf5_check_attr (hid_t loc_id, const char *attr_name);
extern OCTINTERP_API bool
hdf5_get_scalar_attr (hid_t loc_id, hid_t type_id, const char *attr_name,
void *buf);
extern OCTINTERP_API herr_t
hdf5_add_attr (hid_t loc_id, const char *attr_name);
extern OCTINTERP_API herr_t
hdf5_add_scalar_attr (hid_t loc_id, hid_t type_id,
const char *attr_name, void *buf);
#ifdef USE_64_BIT_IDX_T
#define H5T_NATIVE_IDX H5T_NATIVE_INT64
#else
#define H5T_NATIVE_IDX H5T_NATIVE_INT
#endif
#endif
#endif