/* Copyright (C) 2003-2015 John W. Eaton This file is part of Octave. Octave is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. Octave is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with Octave; see the file COPYING. If not, see . */ #if !defined (octave_ls_hdf5_h) #define octave_ls_hdf5_h 1 #if defined (HAVE_HDF5) #include "oct-hdf5.h" // first, we need to define our own dummy stream subclass, since // HDF5 needs to do its own file i/o // hdf5_fstreambase is used for both input and output streams, modeled // on the fstreambase class in class hdf5_fstreambase : virtual public std::ios { public: // HDF5 uses an "id" to refer to an open file hid_t file_id; // keep track of current item index in the file int current_item; hdf5_fstreambase () : file_id (-1), current_item () { } ~hdf5_fstreambase () { close (); } hdf5_fstreambase (const char *name, int mode, int /* prot */ = 0) : file_id (-1), current_item (-1) { if (mode & std::ios::in) file_id = H5Fopen (name, H5F_ACC_RDONLY, H5P_DEFAULT); else if (mode & std::ios::out) { if (mode & std::ios::app && H5Fis_hdf5 (name) > 0) file_id = H5Fopen (name, H5F_ACC_RDWR, H5P_DEFAULT); else file_id = H5Fcreate (name, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); } if (file_id < 0) std::ios::setstate (std::ios::badbit); current_item = 0; } void close () { if (file_id >= 0) { if (H5Fclose (file_id) < 0) std::ios::setstate (std::ios::badbit); file_id = -1; } } void open (const char *name, int mode, int) { clear (); if (mode & std::ios::in) file_id = H5Fopen (name, H5F_ACC_RDONLY, H5P_DEFAULT); else if (mode & std::ios::out) { if (mode & std::ios::app && H5Fis_hdf5 (name) > 0) file_id = H5Fopen (name, H5F_ACC_RDWR, H5P_DEFAULT); else file_id = H5Fcreate (name, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); } if (file_id < 0) std::ios::setstate (std::ios::badbit); current_item = 0; } }; // input and output streams, subclassing istream and ostream // so that we can pass them for stream parameters in the functions below. class hdf5_ifstream : public hdf5_fstreambase, public std::istream { public: hdf5_ifstream () : hdf5_fstreambase (), std::istream (0) { } hdf5_ifstream (const char *name, int mode = std::ios::in|std::ios::binary, int prot = 0) : hdf5_fstreambase (name, mode, prot), std::istream (0) { } void open (const char *name, int mode = std::ios::in|std::ios::binary, int prot = 0) { hdf5_fstreambase::open (name, mode, prot); } }; class hdf5_ofstream : public hdf5_fstreambase, public std::ostream { public: hdf5_ofstream () : hdf5_fstreambase (), std::ostream (0) { } hdf5_ofstream (const char *name, int mode = std::ios::out|std::ios::binary, int prot = 0) : hdf5_fstreambase (name, mode, prot), std::ostream (0) { } void open (const char *name, int mode = std::ios::out|std::ios::binary, int prot = 0) { hdf5_fstreambase::open (name, mode, prot); } }; // Callback data structure for passing data to hdf5_read_next_data, below. struct hdf5_callback_data { hdf5_callback_data (void) : name (), global (false), tc (), doc () { } // the following fields are set by hdf5_read_data on successful return: // the name of the variable std::string name; // whether it is global bool global; // the value of the variable, in Octave form octave_value tc; // a documentation string (NULL if none) std::string doc; }; #if HAVE_HDF5_INT2FLOAT_CONVERSIONS extern OCTINTERP_API hid_t save_type_to_hdf5 (save_type st) #endif extern OCTINTERP_API hid_t hdf5_make_complex_type (hid_t num_type); extern OCTINTERP_API bool hdf5_types_compatible (hid_t t1, hid_t t2); extern OCTINTERP_API herr_t hdf5_read_next_data (hid_t group_id, const char *name, void *dv); extern OCTINTERP_API bool add_hdf5_data (hid_t loc_id, const octave_value& tc, const std::string& name, const std::string& doc, bool mark_as_global, bool save_as_floats); extern OCTINTERP_API int save_hdf5_empty (hid_t loc_id, const char *name, const dim_vector d); extern OCTINTERP_API int load_hdf5_empty (hid_t loc_id, const char *name, dim_vector &d); extern OCTINTERP_API std::string read_hdf5_data (std::istream& is, const std::string& filename, bool& global, octave_value& tc, std::string& doc, const string_vector& argv, int argv_idx, int argc); extern OCTINTERP_API bool save_hdf5_data (std::ostream& os, const octave_value& tc, const std::string& name, const std::string& doc, bool mark_as_global, bool save_as_floats); extern OCTINTERP_API bool hdf5_check_attr (hid_t loc_id, const char *attr_name); extern OCTINTERP_API bool hdf5_get_scalar_attr (hid_t loc_id, hid_t type_id, const char *attr_name, void *buf); extern OCTINTERP_API herr_t hdf5_add_attr (hid_t loc_id, const char *attr_name); extern OCTINTERP_API herr_t hdf5_add_scalar_attr (hid_t loc_id, hid_t type_id, const char *attr_name, void *buf); #ifdef USE_64_BIT_IDX_T #define H5T_NATIVE_IDX H5T_NATIVE_INT64 #else #define H5T_NATIVE_IDX H5T_NATIVE_INT #endif #endif #endif