#! /bin/sh # # Copyright by The HDF Group. # All rights reserved. # # This file is part of HDF5. The full HDF5 copyright notice, including # terms governing use, modification, and redistribution, is contained in # the COPYING file, which can be found at the root of the source code # distribution tree, or in https://www.hdfgroup.org/licenses. # If you do not have access to either file, you may request a copy from # help@hdfgroup.org. # ############################################################################ ## ## ## Things You May Have to Modify: ## ## ## ## If the following paths don't point to the place were HDF5 is installed ## ## on your system (i.e., you received a binary distribution or moved the ## ## files from the originally installed directory to another directory) ## ## then modify them accordingly to represent the new paths. ## ## ## ############################################################################ prefix="/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20231211" exec_prefix="${prefix}" libdir="${exec_prefix}/lib" includedir="${prefix}/include" HL="hl" ############################################################################ ## ## ## Things You Can Modify to Override HDF5 Library Build Components: ## ## ## ## (Advanced usage - know what you're doing - you're on your own here.) ## ## The four variables below can be used to insert paths and flags in ## ## CPPFLAGS, CXXFLAGS, LDFLAGS, or LIBS in the h5cc compile line: ## ## $CXXLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CXXFLAGS $CXXFLAGS ## ## $LDFLAGS $LIBS $clibpath $link_objs $link_args $shared_link ## ## ## ## These settings can be overridden by setting HDF5_CXXFLAGS, ## ## HDF5_CPPFLAGS, HDF5_LDFLAGS, or HDF5_LIBS in the environment. ## ## ## ############################################################################ CXXFLAGSBASE="" CPPFLAGSBASE="" LDFLAGSBASE="" LIBSBASE="" ############################################################################ ## ## ## You shouldn't have to modify anything below this line. ## ## ## ############################################################################ # Constants definitions EXIT_SUCCESS=0 EXIT_FAILURE=1 host_os="linux-gnu" prog_name="`basename $0`" allargs="" compile_args="" libraries="" link_args="" link_objs="" clibpath="" do_link="yes" do_compile="no" dash_o="no" dash_c="no" get_output_file="no" SHOW="eval" CXXBASE="/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20231211/bin/mpic++" CXXLINKERBASE="/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20231211/bin/mpic++" # CXXFLAGS, CPPFLAGS and LDFLAGS are reserved for use by the script user. # FLAGS brought from the hdf5 build are put in H5BLD_*FLAGS. # User's CPPFLAGS and CXXFLAGS come after their H5BLD counterparts. User's # LDFLAGS come just before clibpath, user's LIBS come after $link_objs and # before the hdf5 libraries in $link_args, followed by any external library # paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in # from the hdf5 build. The order of the flags is intended to give precedence # to the user's flags. H5BLD_CXXFLAGS=" -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20231211/include -fdebug-prefix-map=/home/conda/feedstock_root/build_artifacts/hdf5_1701790405937/work=/usr/local/src/conda/hdf5-1.14.3 -fdebug-prefix-map=/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20231211=/usr/local/src/conda-prefix" H5BLD_CPPFLAGS=" -I/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20231211/include -I/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20231211/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20231211/include" H5BLD_LDFLAGS=" -L/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20231211/lib -L/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20231211/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20231211/lib -Wl,-rpath-link,/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20231211/lib -L/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20231211/lib -Wl,--no-as-needed -Wl,--disable-new-dtags" H5BLD_LIBS="-lcrypto -lcurl -lpthread -lsz -lz -ldl -lm " CXX="${HDF5_CXX:-$CXXBASE}" CXXLINKER="${HDF5_CXXLINKER:-$CXXLINKERBASE}" CXXFLAGS="${HDF5_CXXFLAGS:-$CXXFLAGSBASE}" CPPFLAGS="${HDF5_CPPFLAGS:-$CPPFLAGSBASE}" LDFLAGS="${HDF5_LDFLAGS:-$LDFLAGSBASE}" LIBS="${HDF5_LIBS:-$LIBSBASE}" # If a static library is available, the default will be to use it. If the only # available library is shared, it will be used by default. The user can # override either default, although choosing an unavailable library will result # in link errors. STATIC_AVAILABLE="no" if test "${STATIC_AVAILABLE}" = "yes"; then USE_SHARED_LIB="${HDF5_USE_SHLIB:-no}" else USE_SHARED_LIB="${HDF5_USE_SHLIB:-yes}" fi usage() { # A wonderfully informative "usage" message. echo "usage: $prog_name [OPTIONS] " echo " OPTIONS:" echo " -help This help message." echo " -echo Show all the shell commands executed" echo " -prefix=DIR Prefix directory to find HDF5 lib/ and include/" echo " subdirectories [default: $prefix]" echo " -show Show the commands without executing them" echo " -showconfig Show the HDF5 library configuration summary" echo " -shlib Compile with shared HDF5 libraries [default for hdf5 built" echo " without static libraries]" echo " -noshlib Compile with static HDF5 libraries [default for hdf5 built" echo " with static libraries]" echo " " echo " - the normal compile line options for your compiler." echo " $prog_name uses the same compiler you used to compile" echo " HDF5. Check with your compiler's man pages for more" echo " information on which options are needed." echo " " echo " You can override the compiler, linker, and whether or not to use static" echo " or shared libraries to compile your program by setting the following" echo " environment variables accordingly:" echo " " echo " HDF5_CXX - use a different C++ compiler" echo " HDF5_CXXLINKER - use a different linker" echo " HDF5_USE_SHLIB=[yes|no] - use shared or static version of the HDF5 library" echo " [default: no except when built with only" echo " shared libraries]" echo " You can also add or change paths and flags to the compile line using" echo " the following environment variables or by assigning them to their counterparts" echo " in the 'Things You Can Modify to Override...'" section of $prog_name echo " " echo " Variable Current value to be replaced" echo " HDF5_CPPFLAGS \"$CPPFLAGSBASE\"" echo " HDF5_CXXFLAGS \"$CXXFLAGSBASE\"" echo " HDF5_LDFLAGS \"$LDFLAGSBASE\"" echo " HDF5_LIBS \"$LIBSBASE\"" echo " " echo " Note that adding library paths to HDF5_LDFLAGS where another hdf5 version" echo " is located may link your program with that other hdf5 library version." echo " " exit $EXIT_FAILURE } # Show the configuration summary of the library recorded in the # libhdf5.settings file reside in the lib directory. showconfigure() { cat ${libdir}/libhdf5.settings status=$? } # Main status=$EXIT_SUCCESS if test "$#" = "0"; then # No parameters specified, issue usage statement and exit. usage fi case "$CXX" in gcc) kind="gcc" ;; mpicc|mpcc|mpicc_r) # Is this gcc masquarading as an MPI compiler? if test "`${CXX} -v 2>&1 | sed -n 2p | cut -c1-3`" = "gcc"; then kind="gcc" else # Nope kind="$host_os" fi ;; *) kind="$host_os" ;; esac for arg in $@ ; do if test "x$get_output_file" = "xyes"; then link_args="$link_args $arg" output_file="$arg" get_output_file="no" continue fi case "$arg" in -c) allargs="$allargs $arg" compile_args="$compile_args $arg" if test "x$do_link" = "xyes" -a -n "$output_file"; then compile_args="$compile_args -o $output_file" fi do_link="no" dash_c="yes" ;; -o) allargs="$allargs $arg" dash_o="yes" if test "x$dash_c" = "xyes"; then compile_args="$compile_args $arg" else link_args="$link_args $arg" do_link="yes" get_output_file="yes" fi ;; -E|-M|-MT) allargs="$allargs $arg" compile_args="$compile_args $arg" dash_c="yes" do_link="no" ;; -l*) libraries=" $libraries $arg " allargs="$allargs $arg" ;; -prefix=*) prefix="`expr "$arg" : '-prefix=\(.*\)'`" ;; -echo) set -x ;; -show) SHOW="echo" ;; -showconfig) showconfigure exit $status ;; -shlib) USE_SHARED_LIB="yes" ;; -noshlib) USE_SHARED_LIB="no" ;; -help) usage ;; *\"*) qarg="'"$arg"'" allargs="$allargs $qarg" ;; *\'*) qarg='\"'"$arg"'\"' allargs="$allargs $qarg" ;; *) allargs="$allargs $qarg" if [ -s "$arg" ] ; then ext=`expr "$arg" : '.*\(\..*\)'` if [ "$ext" = ".C" -o "$ext" = ".cxx" -o "$ext" = ".cpp" -o \ "$ext" = ".cc" -o "$ext" = ".c" -o "$ext" = ".CC" ] ; then do_compile="yes" compile_args="$compile_args $arg" fname=`basename $arg $ext` link_objs="$link_objs $fname.o" elif [ "$ext" = ".o" ] ; then if test "x$dash_c" = "xyes" ; then compile_args="$compile_args $arg" else do_link="yes" link_objs="$link_objs $arg" fi elif test "x$ext" = "x.a"; then # This is an archive that we're linking in libraries=" $libraries $arg " else compile_args="$compile_args $arg" link_args="$link_args $arg" fi else compile_args="$compile_args $arg" link_args="$link_args $arg" fi ;; esac done if test "x$do_compile" = "xyes"; then if test "x$dash_c" != "xyes"; then compile_args="-c $compile_args" fi $SHOW $CXX -I$includedir $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CXXFLAGS $CXXFLAGS $compile_args status=$? if test "$status" != "0"; then exit $status fi fi if test "x$do_link" = "xyes"; then shared_link="" # conditionally link with the hl library if test "X$HL" = "Xhl"; then libraries=" $libraries -lhdf5_hl_cpp -lhdf5_cpp -lhdf5_hl -lhdf5 " else libraries=" $libraries -lhdf5_cpp -lhdf5 " fi link_args="$link_args -L${libdir}" case "$kind" in gcc|linux*) # MacOS X doesn't support the "-Wl,-rpath -Wl," style of linker flags. # It appears to want none of them specified. case "$host_os" in darwin*) flag="" ;; *) flag="-Wl,-rpath -Wl," ;; esac ;; hpux*) flag="-Wl,+b -Wl," ;; freebsd*|solaris*) flag="-R" ;; rs6000*|aix*) flag="-L" ;; sgi) flag="-rpath " ;; *) flag="" ;; esac if test -n "$flag"; then shared_link="${flag}${libdir}" fi if test "x$USE_SHARED_LIB" != "xyes"; then # The "-lhdf5" & "-lhdf5_hl" flags are in here already...This is a static # compile though, so change it to the static version (.a) of the library. new_libraries="" for lib in $libraries; do case "$lib" in -lhdf5) new_libraries="$new_libraries ${libdir}/libhdf5.a" ;; -lhdf5_hl) new_libraries="$new_libraries ${libdir}/libhdf5_hl.a" ;; -lhdf5_cpp) new_libraries="$new_libraries ${libdir}/libhdf5_cpp.a" ;; -lhdf5_hl_cpp) new_libraries="$new_libraries ${libdir}/libhdf5_hl_cpp.a" ;; *) new_libraries="$new_libraries $lib" ;; esac done libraries="$new_libraries" fi for lib in $libraries; do if echo $link_args | grep " $lib " > /dev/null || echo $link_args | grep " $lib$" > /dev/null; then : else link_args="$link_args $lib " fi done # The LIBS are just a bunch of -l* libraries necessary for the HDF5 # module. It's okay if they're included twice in the compile line. link_args="$link_args $H5BLD_LDFLAGS $H5BLD_LIBS" # User's CPPFLAGS and CXXFLAGS come after their H5BLD counterparts. User's # LDFLAGS come just before clibpath, user's LIBS come after $link_objs and # before the hdf5 libraries in $link_args, followed by any external library # paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in # from the hdf5 build. The order of the flags is intended to give precedence # to the user's flags. $SHOW $CXXLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CXXFLAGS $CXXFLAGS $LDFLAGS $clibpath $link_objs $LIBS $link_args $shared_link status=$? fi exit $status