#! /bin/bash
##
## Copyright (C) by Argonne National Laboratory
## See COPYRIGHT in top-level directory
##
# Simple script to compile and/or link MPI programs.
# This script knows the default flags and libraries, and can handle
# alternative C compilers and the associated flags and libraries.
# The important terms are:
# includedir, libdir - Directories containing an *installed* mpich
# prefix, execprefix - Often used to define includedir and libdir
# FC - Fortran 90 compiler
# WRAPPER_FCFLAGS - Any special flags needed to compile
# WRAPPER_LDFLAGS - Any special flags needed to link
# WRAPPER_LIBS - Any special libraries needed in order to link
# FC_OTHER_LIBS - Yet more libraries, needed just with FC
#
# We assume that (a) the C compiler can both compile and link programs
#
# Handling of command-line options:
# This is a little tricky because some options may contain blanks.
#
# Special issues with shared libraries - todo
#
# --------------------------------------------------------------------------
# Set the default values of all variables.
#
# Directory locations: Fixed for any MPI implementation.
# Set from the directory arguments to configure (e.g., --prefix=/usr/local)
prefix=/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20240125
exec_prefix=/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20240125
sysconfdir=/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20240125/etc
includedir=/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20240125/include
libdir=/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20240125/lib
modincdir=${prefix}/include
# Default settings for compiler, flags, and libraries
# Determined by a combination of environment variables and tests within
# configure (e.g., determining whether -lsocket is needee)
FC="x86_64-conda-linux-gnu-gfortran"
FCCPP=""
#
# Fortran 90 Compiler characteristics
FCINC="-I"
# f90modinc specifies how to add a directory to the search path for modules.
# Some compilers (Intel ifc version 5) do not support this concept, and
# instead need
# a specific list of files that contain module names and directories.
# The FCMODINCSPEC is a more general approach that uses
and
# for the directory and file respectively.
FCMODINC="-I"
FCMODINCSPEC=""
FCEXT="f90"
MPICH_VERSION="4.1.2"
# How to pass a linker flag through the compiler.
wl="-Wl,"
# Static library suffix (normally "a").
libext="a"
# Shared library suffix (normally "so").
shlibext="so"
# Format of library name prefix.
libname_spec="lib\$name"
# Library names that the linker finds when passed -lNAME.
library_names_spec="\$libname\$shrext"
# Flag to hardcode $libdir into a binary during linking.
# This must work even if $libdir does not exist.
hardcode_libdir_flag_spec="\${wl}-rpath \${wl}\$libdir"
# Flag to add dtags to allow using runpath instead of rpath
enable_dtags_flag="-Wl,--enable-new-dtags"
disable_dtags_flag="-Wl,--disable-new-dtags"
# Whether we need a single -rpath flag with a separated argument.
hardcode_libdir_separator=""
# Set to yes if using DIR/libNAME.so during linking hardcodes DIR into the
# resulting binary.
hardcode_direct="no"
# Set to yes if using the -LDIR flag during linking hardcodes DIR into the
# resulting binary.
hardcode_minus_L="no"
# Attempt to construct dynamic loading info, based on the user
# preference of rpath, runpath or none and on the detected libdir
# flags.
with_wrapper_dl_type=runpath
if test "X${with_wrapper_dl_type}" = "Xrunpath" ; then
eval wrapper_dl_type_flags=\"${hardcode_libdir_flag_spec} ${enable_dtags_flag}\"
elif test "X${with_wrapper_dl_type}" = "Xrpath" ; then
eval wrapper_dl_type_flags=\"${hardcode_libdir_flag_spec} ${disable_dtags_flag}\"
else
wrapper_dl_type_flags=""
fi
# Internal variables
# Show is set to echo to cause the compilation command to be echoed instead
# of executed.
Show=
#
# End of initialization of variables
#---------------------------------------------------------------------
# Check recursive situations
# User mistakes, e.g. setting MPICH_CC=mpicc, may end up recursively running
# this script. A simple check to bail if that's the case.
if [ -n "$MPICH_RECURSION_CHECK" ] ; then
echo "This script ($0) is being called recursively, check that MPICH_FC does not refer to mpifort."
exit 1
fi
MPICH_RECURSION_CHECK=1
export MPICH_RECURSION_CHECK
# Environment Variables.
# The environment variables MPICH_FC may be used to override the
# default choices.
# In addition, if there is a file $sysconfdir/mpifort-$FCname.conf,
# where FCname is the name of the compiler with all spaces replaced by hyphens
# (e.g., "fc -64" becomes "fc--64", that file is sources, allowing other
# changes to the compilation environment. See the variables used by the
# script (defined above)
# Added MPICH_FC_OLD, MPICH_FC can be used to prefix FC with external utility,
# e.g. setenv MPICH_FC 'eval linkcache $MPICH_FC_OLD'
if [ -n "$MPICH_FC" ] ; then
MPICH_FC_OLD="$FC"
FC="$MPICH_FC"
FCname=`echo $FC | sed 's/ /-/g'`
if [ -s $sysconfdir/mpifort-$FCname.conf ] ; then
. $sysconfdir/mpifort-$FCname.conf
fi
fi
# Allow a profiling option to be selected through an environment variable
if [ -n "$MPIFORT_PROFILE" ] ; then
profConf=$MPIFORT_PROFILE
fi
#
# ------------------------------------------------------------------------
# Argument processing.
# This is somewhat awkward because of the handling of arguments within
# the shell. We want to handle arguments that include spaces without
# losing the spacing (an alternative would be to use a more powerful
# scripting language that would allow us to retain the array of values,
# which the basic (rather than enhanced) Bourne shell does not.
#
# Look through the arguments for arguments that indicate compile only.
# If these are *not* found, add the library options
linking=yes
allargs=("$@")
argno=0
cppflags=()
interlib_deps=yes
static_mpi=no
for arg in "$@" ; do
# Set addarg to no if this arg should be ignored by the C compiler
addarg=yes
case "$arg" in
# ----------------------------------------------------------------
# Compiler options that affect whether we are linking or no
-c|-S|-E|-M|-MM)
# The compiler links by default
linking=no
;;
# ----------------------------------------------------------------
# Options that control how we use mpifort (e.g., -show,
# -fc=* -config=*
-static)
interlib_deps=no
;;
-static-mpi)
interlib_deps=no
static_mpi=yes
addarg=no
;;
-echo)
addarg=no
set -x
;;
-fc=*)
FC=`echo A$arg | sed -e 's/A-fc=//g'`
addarg=no
;;
-fc=*)
FC=`echo A$arg | sed -e 's/A-fc=//g'`
addarg=no
;;
-show)
addarg=no
Show=echo
;;
-config=*)
addarg=no
FCname=`echo A$arg | sed -e 's/A-config=//g'`
if [ -s "$sysconfdir/mpifort-$FCname.conf" ] ; then
. "$sysconfdir/mpifort-$FCname.conf"
else
echo "Configuration file mpifort-$FCname.conf not found"
fi
;;
-compile-info|-compile_info)
# -compile_info included for backward compatibility
Show=echo
addarg=no
;;
-link-info|-link_info)
# -link_info included for backward compatibility
Show=echo
addarg=no
;;
-v)
# Pass this argument to the compiler as well.
echo "mpifort for MPICH version $MPICH_VERSION"
# if there is only 1 argument, it must be -v.
if [ "$#" -eq "1" ] ; then
linking=no
fi
;;
-profile=*)
# Pass the name of a profiling configuration. As
# a special case, lib.so or lib.la may be used
# if the library is in $libdir
profConf=`echo A$arg | sed -e 's/A-profile=//g'`
addarg=no
# Loading the profConf file is handled below
;;
-nativelinking)
# Internal option to use native compiler for linking without MPI libraries
nativelinking=yes
addarg=no
;;
-help)
NC=`echo "$FC" | sed 's%\/% %g' | awk '{print $NF}' -`
if [ -f "$sysconfdir/mpixxx_opts.conf" ] ; then
. $sysconfdir/mpixxx_opts.conf
echo " -fc=xxx - Reset the native compiler to xxx."
else
if [ -f "./mpixxx_opts.conf" ] ; then
. ./mpixxx_opts.conf
echo " -fc=xxx - Reset the native compiler to xxx."
fi
fi
exit 0
;;
# The following are special args used to handle .F files when the
# Fortran compiler itself does not handle these options
-I*)
cppflags[${#cppflags}]="$arg"
;;
-D*)
cppflags[${#cppflags}]="$arg"
;;
*.F|*.F90|.fpp|.FPP)
# If FCCPP is not empty, then we need to do the following:
# If any input files have the .F or .F90 extension, then
# If FCCPP = false, then
# generate an error message and exit
# Use FCCPP to convert the file from .F to .f, using
# $TMPDIR/f$$-$count.f as the output file name
# Replace the input file with this name in the args
# This is needed only for very broken systems
#
if [ -n "$FCCPP" ] ; then
if [ "$FCCPP" = "false" ] ; then
echo "This Fortran compiler does not accept .F or .F90 files"
exit 1
fi
addarg=no
# Remove and directory names and extension
$ext=`expr "$arg" : '.*\(\..*\)'`
bfile=`basename $arg $ext`
#
TMPDIR=${TMPDIR:-/tmp}
# Make sure that we use a valid extension for the temp file.
tmpfile=$TMPDIR/f$$-$bfile.$FCEXT
if $FCCPP "${cppflags[@]}" $arg > $tmpfile ; then
# Add this file to the commandline list
count=`expr $count + 1`
allargs[${#allargs}]="$tmpfile"
rmfiles="$rmfiles $tmpfile"
else
echo "Aborting compilation because of failure in preprocessing step"
echo "for file $arg ."
exit 1
fi
fi
# Otherwise, just accept the argument
;;
# - end of special handling for .F files
esac
if [ $addarg = no ] ; then
unset allargs[$argno]
fi
# Some versions of bash do not accept ((argno++))
argno=`expr $argno + 1`
done
if [ $# -eq 0 ] ; then
echo "Error: Command line argument is needed!"
"$0" -help
exit 1
fi
# -----------------------------------------------------------------------
# Derived variables. These are assembled from variables set from the
# default, environment, configuration file (if any) and command-line
# options (if any)
#
# The library lib${MPILIBNAME}fort contains the f90-specific (or later) features,
# such as the module objects and the routines defined by them
# (MPI_SIZEOF is handled in lib${MPILIBNAME)fort, for example).
PROFILE_FOO=
# Handle the case of a profile switch
if [ -n "$profConf" ] ; then
profConffile=
if [ -s "$libdir/lib$profConf.a" -o -s "$libdir/lib$profConf.so" ] ; then
PROFILE_FOO="-l$profConf"
elif [ -s "$sysconfdir/$profConf.conf" ] ; then
profConffile="$sysconfdir/$profConf.conf"
elif [ -s "$profConf.conf" ] ; then
profConffile="$profConf.conf"
else
echo "Profiling configuration file $profConf.conf not found in $sysconfdir"
fi
if [ -n "$profConffile" -a -s "$profConffile" ] ; then
. $profConffile
fi
fi
# Construct the line to add the include directory (not all compilers
# use -I, unfortunately)
if [ -z "${FCINC}" ] ; then
# If there is no path, add a link to the mpif.h file.
# There *must* be a way to provide the path the any modules (there
# may be too many to link)
if [ ! -r mpif.h ] ; then
#echo "Adding a symbolic link for mpif.h"
trap "$Show rm -f mpif.h" 0
# This should really be the (related) f77includedir.
$Show ln -s ${includedir}/mpif.h mpif.h
# Remember to remove this file
rmfiles="$rmfiles mpif.h"
fi
FCINCDIRS=
else
# Normally, FCINC is just -I, but some compilers have used different
# command line arguments
FCINCDIRS=${FCINC}${includedir}
fi
# Handle the specification of the directory containing the modules
if [ -n "$FCMODINCSPEC" ] ; then
newarg=`echo A"$FCMODINCSPEC" | \
sed -e 's/^A//' -e 's%%'"$includedir%g" -e 's//mpi/g'`
FCMODDIRS="$newarg"
elif [ -n "$FCMODINC" ] ; then
FCMODDIRS="${FCMODINC}$modincdir"
fi
final_fcflags=" -I/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20240125/include -fallow-argument-mismatch"
final_ldflags=" -L/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20240125/lib -Wl,-rpath,/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20240125/lib"
final_libs=""
if test "yes" = "no" -o "${interlib_deps}" = "no" ; then
final_ldflags="${final_ldflags} -L/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20240125/lib -Wl,-rpath,/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20240125/lib"
final_libs="${final_libs} -L/cvmfs/northgrid.gridpp.ac.uk/simonsobservatory/conda/so-conda-py310-20240125/lib -lm -latomic -lpthread -ldl"
fi
extra_f77_flags=""
if test "mpif77" = ${0##*/} -a -n "$extra_f77_flags" ; then
final_fcflags="${final_fcflags} $extra_f77_flags"
fi
# A temporary statement to invoke the compiler
# Place the -L before any args in case there are any mpi libraries in there.
# Eventually, we'll want to move this after any non-MPI implementation
# libraries
if [ "$linking" = yes ] ; then
if [ "$nativelinking" = yes ] ; then
$Show $FC $PROFILE_INCPATHS ${final_fcflags} ${final_ldflags} "${allargs[@]}"
rc=$?
else
if [ "$static_mpi" = no ] ; then
$Show $FC $PROFILE_INCPATHS ${final_fcflags} ${final_ldflags} "${allargs[@]}" $FCINCDIRS $FCMODDIRS -L$libdir -lmpifort $PROFILE_PRELIB $PROFILE_FOO ${wrapper_dl_type_flags} -lmpi $PROFILE_POSTLIB ${final_libs}
else
$Show $FC $PROFILE_INCPATHS ${final_fcflags} ${final_ldflags} "${allargs[@]}" $FCINCDIRS $FCMODDIRS -L$libdir -lmpifort $PROFILE_PRELIB $PROFILE_FOO ${wrapper_dl_type_flags} $libdir/libmpi.a $PROFILE_POSTLIB ${final_libs}
fi
rc=$?
fi
else
$Show $FC $PROFILE_INCPATHS ${final_fcflags} "${allargs[@]}" $FCINCDIRS $FCMODDIRS
rc=$?
fi
if [ -n "$rmfiles" ] ; then
for file in $rmfiles ; do
objfile=`basename $file .f`
if [ -s "${objfile}.o" ] ; then
# Rename
destfile=`echo $objfile | sed -e "s/.*$$-//"`
mv -f ${objfile}.o ${destfile}.o
fi
rm -f $file
done
rm -f $rmfiles
fi
exit $rc