{+ file: mbp_sites.sdb +} {+ description: CNS heavy atom database file +} {- begin block parameter definition -} define( {==================== derivative/MAD coordinates =====================} {+ list: for each site define: - whether the site is to be refined, fixed or ignored - derivative name (must be the same for all sites in a derivative) - chemical type (note: wavelength-dependent form factors are specified in mad_refine.inp) - coordinates (x, y, z) - B-value (b) - occupancy (q) - group name (g) +} {+ list: the optional group name (g) is a string of upto 4 characters. If a group is left blank, each site is refined individually. If a group is specified, all sites with the same group name and the same derivative name are treated as a rigid body, and their occupancies, B-values, and form factors are refined as a group. +} {+ table: rows=4 numbered cols=9 "action" "derivative name" "chemical type" "x coordinate" "y coordinate" "z coordinate" "B-value" "occupancy" "group" +} {+ choice: "refine" "fix" "ignore" +} {===>} site.action_1="refine"; {===>} site.segid_1="MBP"; site.type_1="Yb"; {===>} site.x_1=1.499; site.y_1=5.064; site.z_1=7.509; {===>} site.b_1=11.76; site.q_1=1; site.g_1=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_2="refine"; {===>} site.segid_2="MBP"; site.type_2="Yb"; {===>} site.x_2=8.561; site.y_2=1.445; site.z_2=10.492; {===>} site.b_2=13.31; site.q_2=1; site.g_2=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_3="refine"; {===>} site.segid_3="MBP"; site.type_3="Yb"; {===>} site.x_3=48.015; site.y_3=71.731; site.z_3=5.021; {===>} site.b_3=4.66; site.q_3=1; site.g_3=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_4="refine"; {===>} site.segid_4="MBP"; site.type_4="Yb"; {===>} site.x_4=9.961; site.y_4=35.793; site.z_4=1.38; {===>} site.b_4=15.49; site.q_4=1; site.g_4=""; {* to appended new entries or merge this file with other site database files use sdb_manipulate.inp *} {===========================================================================} { things below this line do not normally need to be changed } {===========================================================================} ) {- end block parameter definition -}