{+ file: heavy_atom.sdb +} {+ description: CNS heavy atom database file +} {+ copyright: Yale University +} {- begin block parameter definition -} define( {============================ space group ============================} {* space group *} {* use International Table conventions with subscripts substituted by parenthesis *} {===>} sg=""; {==================== derivative/MAD coordinates =====================} {+ list: for each site define: - whether the site is to be refined, fixed or ignored - derivative name (must be the same for all sites in a derivative) - chemical type (note: wavelength-dependent form factors are specified in mad_refine.inp) - coordinates (x, y, z) - B-value (b) - occupancy (q) - group name (g) +} {+ list: the optional group name (g) is a string of upto 4 characters. If a group is left blank, each site is refined individually. If a group is specified, all sites with the same group name and the same derivative name are treated as a rigid body, and their occupancies, B-values, and form factors are refined as a group. +} {+ table: rows=20 numbered cols=9 "action" "derivative name" "chemical type" "x coordinate" "y coordinate" "z coordinate" "B-value" "occupancy" "group" +} {+ choice: "refine" "fix" "ignore" +} {===>} site.action_1="refine"; {===>} site.segid_1=""; site.type_1=""; {===>} site.x_1=0; site.y_1=0; site.z_1=0; {===>} site.b_1=0; site.q_1=0; site.g_1=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_2="refine"; {===>} site.segid_2=""; site.type_2=""; {===>} site.x_2=0; site.y_2=0; site.z_2=0; {===>} site.b_2=0; site.q_2=0; site.g_2=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_3="refine"; {===>} site.segid_3=""; site.type_3=""; {===>} site.x_3=0; site.y_3=0; site.z_3=0; {===>} site.b_3=0; site.q_3=0; site.g_3=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_4="refine"; {===>} site.segid_4=""; site.type_4=""; {===>} site.x_4=0; site.y_4=0; site.z_4=0; {===>} site.b_4=0; site.q_4=0; site.g_4=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_5="refine"; {===>} site.segid_5=""; site.type_5=""; {===>} site.x_5=0; site.y_5=0; site.z_5=0; {===>} site.b_5=0; site.q_5=0; site.g_5=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_6="refine"; {===>} site.segid_6=""; site.type_6=""; {===>} site.x_6=0; site.y_6=0; site.z_6=0; {===>} site.b_6=0; site.q_6=0; site.g_6=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_7="refine"; {===>} site.segid_7=""; site.type_7=""; {===>} site.x_7=0; site.y_7=0; site.z_7=0; {===>} site.b_7=0; site.q_7=0; site.g_7=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_8="refine"; {===>} site.segid_8=""; site.type_8=""; {===>} site.x_8=0; site.y_8=0; site.z_8=0; {===>} site.b_8=0; site.q_8=0; site.g_8=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_9="refine"; {===>} site.segid_9=""; site.type_9=""; {===>} site.x_9=0; site.y_9=0; site.z_9=0; {===>} site.b_9=0; site.q_9=0; site.g_9=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_10="refine"; {===>} site.segid_10=""; site.type_10=""; {===>} site.x_10=0; site.y_10=0; site.z_10=0; {===>} site.b_10=0; site.q_10=0; site.g_10=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_11="refine"; {===>} site.segid_11=""; site.type_11=""; {===>} site.x_11=0; site.y_11=0; site.z_11=0; {===>} site.b_11=0; site.q_11=0; site.g_11=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_12="refine"; {===>} site.segid_12=""; site.type_12=""; {===>} site.x_12=0; site.y_12=0; site.z_12=0; {===>} site.b_12=0; site.q_12=0; site.g_12=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_13="refine"; {===>} site.segid_13=""; site.type_13=""; {===>} site.x_13=0; site.y_13=0; site.z_13=0; {===>} site.b_13=0; site.q_13=0; site.g_13=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_14="refine"; {===>} site.segid_14=""; site.type_14=""; {===>} site.x_14=0; site.y_14=0; site.z_14=0; {===>} site.b_14=0; site.q_14=0; site.g_14=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_15="refine"; {===>} site.segid_15=""; site.type_15=""; {===>} site.x_15=0; site.y_15=0; site.z_15=0; {===>} site.b_15=0; site.q_15=0; site.g_15=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_16="refine"; {===>} site.segid_16=""; site.type_16=""; {===>} site.x_16=0; site.y_16=0; site.z_16=0; {===>} site.b_16=0; site.q_16=0; site.g_16=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_17="refine"; {===>} site.segid_17=""; site.type_17=""; {===>} site.x_17=0; site.y_17=0; site.z_17=0; {===>} site.b_17=0; site.q_17=0; site.g_17=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_18="refine"; {===>} site.segid_18=""; site.type_18=""; {===>} site.x_18=0; site.y_18=0; site.z_18=0; {===>} site.b_18=0; site.q_18=0; site.g_18=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_19="refine"; {===>} site.segid_19=""; site.type_19=""; {===>} site.x_19=0; site.y_19=0; site.z_19=0; {===>} site.b_19=0; site.q_19=0; site.g_19=""; {+ choice: "refine" "fix" "ignore" +} {===>} site.action_20="refine"; {===>} site.segid_20=""; site.type_20=""; {===>} site.x_20=0; site.y_20=0; site.z_20=0; {===>} site.b_20=0; site.q_20=0; site.g_20=""; {* to appended new entries or merge this file with other site database files use sdb_manipulate.inp *} {* to delete sites from this file either set the derivative name to be blank or use delete_sites.inp *} {===========================================================================} { things below this line do not normally need to be changed } {===========================================================================} ) {- end block parameter definition -}