remarks file toppar/water-allhdg5-4.param remarks remarks PARAM19.SOL (solvent parameters) remarks =========== remarks available: TIPS3P and DMSO model set message ? end eval ($old_message=$result) set echo ? end eval ($old_echo=$result) set message=off echo=off end checkversion 1.3 {* TIP3P model *} {* =========== *} BOND HT OT 1000.0 0.9572 ! equilibrium from TIPS3P geometry, energy constant increased to 1000, ATB 11/18/10 BOND HT HT 0.0 1.5139 ! not used! ANGLE HT OT HT 500.0 104.52 ! equilibrium from TIPS3P geometry, energy constant increased to 500, ATB 11/18/10 {* original TIP3P for ALL interactions since we use OPLS for the protein *} NONBONDED OT .1521 3.1506 .1521 3.1506 ! ALLOW WAT !TIP3P OXYGEN PARAMETERS, adm jr., NBFIX obsolete NONBONDED HT .0460 .4000 .0460 .4000 ! ALLOW WAT !TIP3P HYDROGEN PARAMETERS, adm jr., NBFIX obsolete {* *} ! DMSO parameters Alexandre Bonvin Utrecht University {* DMSO model *} ! GROMOS parameters from Liu et al JACS 117:4363 (1995) {* ========== *} BOND CDMS SDMS 300.0 1.950 BOND SDMS ODMS 350.0 1.530 ANGLE CDMS SDMS CDMS 110.0 97.40 ANGLE CDMS SDMS ODMS 110.0 106.75 NONBONDED CDMS 0.2940 3.66 0.2940 3.66 NONBONDED SDMS 0.2384 3.56 0.2384 3.56 NONBONDED ODMS 0.0715 2.63 0.0715 2.63 set message=$old_message echo=$old_echo end