GARANT COMMANDS: criteria fragment intrainter - judge peaks in specified sequential range

usage: criteria fragment intrainter <name> <integer1> <integer2>

Define a new criterion of type intrainter and with name <name> for judging the 
quality of fragment assignments using the 'report fragments' command. The 
criterion considers all peaks whose sequential range is bigger or equal to 
<integer1> and smaller or equal to <integer2>. The ratio, r, of the number of
assigned peaks to the number of considered peaks is used to judge the quality of 
the assignment. The ratio r is classified using two thresholds t1 and t2:
	'*' bad:		r < t1
	'-' ok:	    		t1 <= r < t2
	'.' good:		t2 <= r
The default values of the two thresholds are 0.4 and 0.7, respectively. They can be 
redefined using the 'criteria threshold' command. When the comment is turned on 
using the 'criteria comment on' command, the ratio is dispalyed as a comment.

Example:
		# define criterion 'intra' for intra-residual peaks
	criteria fragment intrainter intra 0 0
		# define criterion 'med' for medium range peaks
	criteria fragment intrainter med 2 4
		# display retio of assigned medium range peaks
	criteria comment on med

see also: report fragments, criteria threshold, criteria comment on.