GARANT COMMANDS: criteria fragment mapping - compare two sets of assignments

USAGE: criteria fragment mapping <name>

Defines a new criterion with name <name> of type mapping. The criterion compares
two sets of assignments on the level of fragments. For each measured peak, the
current possible assignments (produced by the automatic routines or loaded 
using the 'load assignments' command) are compared to the possible assignments 
read in using the 'load comparison assignments' command, and a mapping is 
generated. For each fragment occuring in the current assignments of a given peak, 
mappings are added to all the fragments occuring in the comparison assignments of 
the same peak.
The fragments of the current assignment are classified according to the number 
of mapped comparison fragments:
	'.' no comparison fragment
	'.' one comparison fragment
	'+' several comparison fragments
The mapped comparison fargments are listed if the comment for the criterion is 
turned on.

EXAMPLE:
		# defines criterion 'map' of type mapping
		# and turns the comment on
	criteria fragment mapping map
	criteria comment on map
	...

		# calulate and list the fragment report
        report calculate
        report fragments

EXAMPLE OF OUTPUT:
  SER 21 :  +   | 4)  GLU 38  TYR 60
  GLN 22 :  +   | 4)  GLN 16  GLU 38  GLU 42
  ALA 23 :  .   | 4)  ALA 23
  ASP 24 :  +   | 4)  ASP 24  GLU 38

This means: the current assignments of Ser 21 consists of peaks that are 
assigned in the comparison assignments to Glu 38 or to Tyr 60. All peaks 
assigned to Ala 23 are also assigned to Ala 23 in the comparison assignments.

SEE ALSO: report fragment, criteria comment on, assignments