GARANT COMMANDS: criteria fragment template - judge selected subset of peaks

USAGE: criteria fragment template <name1> <name2>

Define a new criterion with name <name1> of type template for judging the 
quality of fragment assignments using the 'report fragments' command. The
criterion considers all peaks that match the specified template <name2> (see 
syntax). The ratio, r, of the number of assigned peaks versus the number of
considered peaks is used to judge the quality of the assignment. Two thresholds, 
t1 and t2, are used to classify this ratio:
	'*' bad assignment:		r < t1
	'-' reasonable assignment:	    t1 <= r < t2
	'.' good assignment:		              t2 <= r
The default values of the thresholds are 0.4 and 0.7, respectively. They can be 
redefined using the 'criteria threshold' command. When the comment is turned on,
using the 'criteria comment on' command, the ratio is dispalyed as comment.

EXAMPLE:
		# define criterion 'seqHA' for sequential HA peaks
	criteria fragment template seqHA "HA(*) *(+1)"

SEE ALSO: report fragments, criteria threshold, criteria comment on, syntax.