GARANT COMMANDS: make noe - generate the expected dipolar couplings

usage: make noe

Dipolar couplings are generated using the atoms and bonds defined for the 
loaded fragments in the fragment library. The following list specifies all 
the couplings that are generated and their likelihood which is used to 
score assignments in the automatic assignment routines:

				intraresidual
				=============
	description					likelihood
	HN(i)  ->  HN(i)				    1.0
	HA(i)  ->  HN(i)				    1.0
	HB(i)  ->  HN(i)				    0.75
	HG(i)  ->  HN(i)				    0.3
	HB(i)  ->  HB(i)				    1.0
	HA(i)  ->  HB(i)				    1.0
	HA(i)  ->  HG(i)				    0.6
				sequential
				==========
	HN(i)  ->  HN(i+1)				    0.5
	HA(i)  ->  HN(i+1)				    0.75
	HB(i)  ->  HN(i+1)				    0.25
	HG(i)  ->  HN(i+1)				    0.05
				sequential PRO
				==============
	HA(i)  ->  HG(PRO i+1)				    0.3
	HN(i)  ->  HG(PRO i+1)				    0.3
				aromatic rings
				==============
	HB(i)  ->  HD(i)				    0.75
	HD(i)  ->  HE(i)				    0.8
	HD(i)  ->  HZ(i)				    0.8

In this specifications HA(i) -> HB(i) indicates that the HA and HB in the same 
residue as well as all proton pairs with same covalent structure (e.g. 
HB(i) -> HG(i), HG(i) -> HD(i), ..) have with a likelihood of 1 an observable 
dipolar coupling. To identify identical covalent structures atoms of type PSEUD
are treated as atoms of type H_ALI.

see also: make peaks, make couplings, make coherences, load sequence