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EXTRA_DIST = ffdoc.h rundoc.h codegen.h mbmd_common.h md_common.h  pbcmd_common.h  smd_common.h dynabhm_common.h dynamip_common.h mdx_common.h shx/atomnametable.h shx/chi.h shx/cs.h shx/cspline.h shx/display.h shx/es.h shx/hbond.h shx/hetatm.h shx/hydrogens.h shx/main.h shx/matrices2.h shx/matrices.h shx/matrices_old.h shx/minerca1.h shx/minerca.h shx/minercb1.h shx/minercb.h shx/minerco1.h shx/minerco.h shx/miner.h shx/minerha1.h shx/minerha.h shx/minerhatoms.h shx/minerhb.h shx/minerhn1.h shx/minerhn.h shx/minern151.h shx/minern15.h shx/n15nn.h shx/nn.h shx/optimize.h shx/phipsi.h shx/proline.h shx/psa.h shx/psi-aa1.h shx/rc.h shx/residue.h shx/rings.h shx/sidechain.h shx/ssbond.h shx/states.h shx/stdvadar.h shx/torison.h shx/vector.h shx/vmain.h swissprot_mod.cpp doc_mod.cpp gsl_mod.cpp mcf_mod.cpp gas_mod.cpp mbmd_mod.cpp md_float_mod.cpp anmr_mod.cpp bmbr_mod.cpp pdbstat_mod.cpp modeler_mod.cpp mft_mod.cpp
INCLUDES = -I.. -I../zeta/ -I../../include/almost/ -I../../modules -I../../forcefield  -I../../util   -I../gc-6.2/include -I../../lib/gsl/include -I/opt/mpich/ch-p4/include
lib_LIBRARIES = libshx.a # libalmutils.a libalmost.a

#libalmutils_a_SOURCES= almost_utils.cpp

#if PECONST
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#else
#PEADD= 
#endif

#if DOCMOD
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#else
#DOCADD= 
#endif

#if MD_FLOAT
#MDFLOAT =  md_float_mod.cpp
#else
#MDFLOAT = 
#endif

#libalmost_a_SOURCES= tmd_mod.cpp topos_mod.cpp anmr_mod.cpp  bmbr_mod.cpp  zeta_mod.cpp os_mod.cpp  math_mod.cpp  pdb_mod.cpp molecules_mod.cpp mdb_mod.cpp    select_mod.cpp dcd_mod.cpp constraint_mod.cpp mdx_mod.cpp moveset_mod.cpp dyna_mod.cpp  md_mod.cpp     math_mod.cpp   mdb_mod.cpp      md_common.h  analysis_mod.cpp  dcd_mod.cpp   energy_mod.cpp minimize_mod.cpp shx_mod.cpp fragments_mod.cpp regex_mod.cpp pdbstat_mod.cpp rose_mod.cpp dynamip_mod.cpp secstruct_mod.cpp agresign_mod.cpp blast_mod.cpp modeler_mod.cpp mft_mod.cpp $(PEADD) $(DOCADD) $(MDFLOAT) almost_utils.cpp
#swissprot_mod.cpp doc_mod.cpp
libshx_a_SOURCES = shx/Cs.c shx/Cspline.c shx/Display.c shx/Dss.c shx/Es.c shx/Hbond.c shx/Hetatm.c shx/Hydrogens.c shx/Main.c shx/Nn.c shx/Optimize.c shx/Phipsi.c shx/Proline.c shx/Residue.c shx/Rings.c shx/Ssbond.c shx/Torison.c shx/Vector.c shx/shxmalloc.cpp
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