/*************************************************************************** ffdoc.h - description ------------------- begin : Tue Nov 18 01:45:35 2003 copyright : (C) 1999-2006 by Cavalli Andrea author : : cavalli $ date : : 2003/12/09 11:10:33 $ id : : coor.h,v 1.1.2.2 2003/12/09 11:10:33 cavalli Exp $ email : cavalli@bioc.unizh.ch amc82@cam.ac.uk **************************************************************************/ /*************************************************************************** * * * This program is free software; you can redistribute it and/or modify * * it under the terms of the GNU General Public License as published by * * the Free Software Foundation; either version 2 of the License, or * * (at your option) any later version. * * * ***************************************************************************/ #ifndef __FFDOC__ #define __FFDOC__ #include namespace Almost { //Doc string for ff options namespace FFDoc { static const string kind = "Acceptable Values: C19 or C22. Selects the kind of force\n" "field to be used. The main difference between C19 and C22, is\n" "that C19 force field does not compute the Urey-Bradley internal\n" "energy term.\n" ; static const string elec = "Acceptable Values: RDIE, CDIE or NONE. Selects the functional\n" "form of the electrostatic interaction. With CDIE (Constant\n" "dielectric) the energy is proportional to 1/R, while with RDIE\n" "(distance dependent dielectric) the interaction is proportional to\n" "1/R^2. NONE turns off electrostatic.\n" ; static const string elec_cutoff = "Acceptable Values:SHIFT or SWITCH. Selects the functional\n" "form of the cut-off function for electrostatic interactions.\n" ; static const string vdw = "Acceptable Values:LJ. Uses standard 6-12 Lennard-Jonnes\n" "potential.\n" ; static const string vdw_cutoff = "Acceptable Values:SHIFT or SWITCH. Selects the functional\n" "form of the cut-off function for van der Waals interactions.\n" ; static const string solv = "Acceptable Values:SASA, EEF1 or NONE. Selects the\n" "implicit solvation model to be used.\n" ; static const string solv_ignore_h = "Not used.\n" ; static const string cut_on = "Acceptable Values: positive real number. Note that cut_on <\n" "cut_off < cut_nb. \n" ; static const string cut_off = "Acceptable Values: positive real number.\n" ; static const string cut_nb = "Acceptable Values: positive real number. \n" ; static const string e_zero = "Acceptable Values: positive real number. Value of the vacuum\n" "dielectric constant. \n" "Default: 332.0716\n" ; static const string e_14 = "Acceptable Values: positive real number. Electrostatic scaling\n" "for 1-4 interaction.\n" ; static const string eps = "Acceptable Values: positive real number. Dielectric \"scaling\"\n" "of electrostatics.\n" ; static const string r_water = "Acceptable Values: positive real number. Radius of\n" "water. Default: 1.4. Only by implicit solvent models. \n" ; static const string alpha = "Acceptable Values: positive real number. SOFT Van der Waal parameter.\n"; } } #endif // Local Variables: // mode:C++ // End: