/***************************************************************************
                          modeler_mod.cpp  -  description
                             -------------------
    begin                : Sun Jul  2 20:36:25 2006
    copyright            : (C) 2002 by Cavalli Andrea
    email                : cavalli@bioc.unizh.ch
**************************************************************************/
/***************************************************************************
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU General Public License as published by  *
 *   the Free Software Foundation; either version 2 of the License, or     *
 *   (at your option) any later version.                                   *
 *                                                                         *
 ***************************************************************************/

#include <zeta/module.h>
#include <zeta/class.h>
#include <zeta/zextclass.h>
#include <zeta/zobj.hpp>
#include <blast.h>
using namespace Almost;

#define ALMTOSTRING(s) \
template<> \
inline string to_string(const s & ){ \
  return "<" #s ">"; \
}

ALMTOSTRING(Molecules);
ALMTOSTRING(MDB);
ALMTOSTRING(Blast::Hit);
ALMTOSTRING(Blast);

template<>
inline string to_string(const AlmModeler &){
  return "<modeler>";
}

template<>
inline string to_string(const HomologyConstraints &){
  return "<homologyconst>";
}


extern "C" {
  void init_modeler(){
    //declarations here

    Module mod = Module("modeler","Homoogy modeler");

    Class<AlmModeler, ArgList2<const Molecules &,string> >(mod.self(),
							   "modeler")
      .def_method("get_pdb",&AlmModeler::get_pdb)
      .def_method("restraints",&AlmModeler::restraints)
      ;

    Class<HomologyConstraints,ArgList3<const Blast::Hit &, string,int> >(mod.self(),"homoogyconst");
    mod.def_function("generate_restraints","Genrate homology restraints",
 		     generate_restraints);
    mod.def_function("restraints_statistics","Prints restraints statistics",
		     restraints_statistics);

    mod.def_function("test_all","Prints statistics on all HSP",
		     test_all);


  }
}