/***************************************************************************
                          topos_mod.cpp  -  description
                             -------------------
    begin                : Thu Jul 12 19:25:13 2007
    copyright            : (C) 2002 by Cavalli Andrea
    email                : cavalli@bioc.unizh.ch
**************************************************************************/
/***************************************************************************
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU General Public License as published by  *
 *   the Free Software Foundation; either version 2 of the License, or     *
 *   (at your option) any later version.                                   *
 *                                                                         *
 ***************************************************************************/

#include <zeta/module.h>
#include <zeta/class.h>
#include <zeta/zextclass.h>
#include <zeta/zobj.hpp>
#include <fstream>
#include <iterator>
#include <iostream>
#include <vector>
#include <map>
#include <set>
#include <cmath>
#include <cheshire/topos.h>
using namespace Almost;

template<>
inline string to_string(const Topos::ZScore &){
  return "<ZScore>";
}

template<>
inline string to_string(const Topos::ResidueDataTriple &){
  return "<RDT>";
}



extern "C" {
  void init_topos(){
    //declarations here

    Module mod = Module("topos","Torsion Angle Prediction from Chemical Shifts");
    mod.def_function("read_database","Reads binary database",Topos::read_database);
    mod.def_function("read_ascii_database",
		     "Reads binary database",Topos::read_ascii_database);
    mod.def_function("topos","Run topos",Topos::topos);
    mod.def_function("bin2ascii","Convert binary to ascii db",Topos::bin2ascii);
    mod.def_function("maketriple","Convert mgr to triple db",Topos::maketriple);
    mod.def_function("database","get database",Topos::database);


    Class<Topos::ZScore,ArgList1<const vector<Topos::ResidueDataTriple> & >  >(mod.self(),
					  "zscore")
      .def_method("zscore",&Topos::ZScore::zscore)
      .def_method("zscore2",&Topos::ZScore::zscore2)
      ;
  }
}