This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by netCDF-Fortran configure 4.2, which was generated by GNU Autoconf 2.66. Invocation command line was $ ./configure CC=gcc CFLAGS= -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ LDFLAGS=-L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib CPPFLAGS=-I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include FC=gfortran FCFLAGS= -O3 -mtune=native F77=gfortran FFLAGS= -O3 -mtune=native --prefix=/mnt/disk2/andrea/bin/AMBER_PARA/amber14 ## --------- ## ## Platform. ## ## --------- ## hostname = nbk36.cerm.unifi.it uname -m = x86_64 uname -r = 2.6.32-431.17.1.el6.x86_64 uname -s = Linux uname -v = #1 SMP Fri Apr 11 17:27:00 EDT 2014 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/cuda-5.0/bin PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/bin PATH: /usr/bin PATH: /bin PATH: /usr/local/sbin PATH: /usr/sbin PATH: /sbin PATH: /home/andrea/bin PATH: /usr/lib64/openmpi/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2661: netCDF-Fortran 4.2 configure:2701: checking build system type configure:2715: result: x86_64-unknown-linux-gnu configure:2735: checking host system type configure:2748: result: x86_64-unknown-linux-gnu configure:2770: checking target system type configure:2783: result: x86_64-unknown-linux-gnu configure:2833: checking for a BSD-compatible install configure:2901: result: /usr/bin/install -c configure:2912: checking whether build environment is sane configure:2962: result: yes configure:3103: checking for a thread-safe mkdir -p configure:3142: result: /bin/mkdir -p configure:3155: checking for gawk configure:3171: found /usr/bin/gawk configure:3182: result: gawk configure:3193: checking whether make sets $(MAKE) configure:3215: result: yes configure:3299: checking user options configure:3303: checking whether extra valgrind tests should be run configure:3311: result: no configure:3315: checking whether parallel IO tests should be run configure:3323: result: no configure:3327: checking whether netCDF extra tests should be run (developers only) configure:3335: result: no configure:3354: checking whether F90 API is desired configure:3362: result: yes configure:3366: checking whether fortran type sizes should be checked configure:3374: result: yes configure:3378: checking whether large file (> 2GB) tests should be run configure:3386: result: no configure:3403: checking whether benchmaks should be run (experimental) configure:3411: result: no configure:3425: checking where to put large temp files if large file tests are run configure:3434: result: . configure:3449: finding C compiler configure:3500: checking for gcc configure:3527: result: gcc configure:3756: checking for C compiler version configure:3765: gcc --version >&5 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3776: $? = 0 configure:3765: gcc -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-4) (GCC) configure:3776: $? = 0 configure:3765: gcc -V >&5 gcc: '-V' option must have argument configure:3776: $? = 1 configure:3765: gcc -qversion >&5 gcc: unrecognized option '-qversion' gcc: no input files configure:3776: $? = 1 configure:3796: checking whether the C compiler works configure:3818: gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c >&5 configure:3822: $? = 0 configure:3870: result: yes configure:3873: checking for C compiler default output file name configure:3875: result: a.out configure:3881: checking for suffix of executables configure:3888: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c >&5 configure:3892: $? = 0 configure:3914: result: configure:3936: checking whether we are cross compiling configure:3944: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c >&5 configure:3948: $? = 0 configure:3955: ./conftest configure:3959: $? = 0 configure:3974: result: no configure:3979: checking for suffix of object files configure:4001: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:4005: $? = 0 configure:4026: result: o configure:4030: checking whether we are using the GNU C compiler configure:4049: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:4049: $? = 0 configure:4058: result: yes configure:4067: checking whether gcc accepts -g configure:4087: gcc -c -g -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:4087: $? = 0 configure:4128: result: yes configure:4145: checking for gcc option to accept ISO C89 configure:4209: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:4209: $? = 0 configure:4222: result: none needed configure:4253: checking for style of include used by make configure:4281: result: GNU configure:4306: checking dependency style of gcc configure:4416: result: gcc3 configure:4432: checking whether gcc and cc understand -c and -o together configure:4463: gcc -c conftest.c -o conftest2.o >&5 configure:4467: $? = 0 configure:4473: gcc -c conftest.c -o conftest2.o >&5 configure:4477: $? = 0 configure:4488: cc -c conftest.c >&5 configure:4492: $? = 0 configure:4500: cc -c conftest.c -o conftest2.o >&5 configure:4504: $? = 0 configure:4510: cc -c conftest.c -o conftest2.o >&5 configure:4514: $? = 0 configure:4532: result: yes configure:4558: checking for an ANSI C-conforming const configure:4623: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:4623: $? = 0 configure:4630: result: yes configure:4659: finding Fortran compiler (will not be used if Fortran API is not desired) configure:4767: checking for Fortran compiler version configure:4776: gfortran --version >&5 GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) Copyright (C) 2010 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:4787: $? = 0 configure:4776: gfortran -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-4) (GCC) configure:4787: $? = 0 configure:4776: gfortran -V >&5 gfortran: '-V' option must have argument configure:4787: $? = 1 configure:4776: gfortran -qversion >&5 gfortran: unrecognized option '-qversion' gfortran: no input files configure:4787: $? = 1 configure:4796: checking whether we are using the GNU Fortran compiler configure:4809: gfortran -c -O3 -mtune=native conftest.F >&5 configure:4809: $? = 0 configure:4818: result: yes configure:4824: checking whether gfortran accepts -g configure:4835: gfortran -c -g conftest.f >&5 configure:4835: $? = 0 configure:4843: result: yes configure:4982: checking for Fortran 77 compiler version configure:4991: gfortran --version >&5 GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) Copyright (C) 2010 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:5002: $? = 0 configure:4991: gfortran -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-4) (GCC) configure:5002: $? = 0 configure:4991: gfortran -V >&5 gfortran: '-V' option must have argument configure:5002: $? = 1 configure:4991: gfortran -qversion >&5 gfortran: unrecognized option '-qversion' gfortran: no input files configure:5002: $? = 1 configure:5011: checking whether we are using the GNU Fortran 77 compiler configure:5024: gfortran -c -O3 -mtune=native conftest.F >&5 configure:5024: $? = 0 configure:5033: result: yes configure:5039: checking whether gfortran accepts -g configure:5050: gfortran -c -g conftest.f >&5 configure:5050: $? = 0 configure:5058: result: yes configure:5095: setting up Fortran 90 configure:5100: checking what FC is set to configure:5102: result: gfortran configure:5118: checking for Fortran flag to compile .f90 files configure:5134: gfortran -c -O3 -mtune=native conftest.f90 >&5 configure:5134: $? = 0 configure:5143: result: none configure:5171: checking fortran 90 modules inclusion flag configure:5196: gfortran -c -O3 -mtune=native conftest.f90 >&5 configure:5196: $? = 0 configure:5213: gfortran -c -O3 -mtune=native -Itmpdir_0 conftest.f90 >&5 configure:5213: $? = 0 configure:5232: result: -I configure:5252: setting up libtool configure:5301: checking how to print strings configure:5328: result: printf configure:5349: checking for a sed that does not truncate output configure:5413: result: /bin/sed configure:5431: checking for grep that handles long lines and -e configure:5489: result: /bin/grep configure:5494: checking for egrep configure:5556: result: /bin/grep -E configure:5561: checking for fgrep configure:5623: result: /bin/grep -F configure:5658: checking for ld used by gcc configure:5725: result: /usr/bin/ld configure:5732: checking if the linker (/usr/bin/ld) is GNU ld configure:5747: result: yes configure:5759: checking for BSD- or MS-compatible name lister (nm) configure:5808: result: /usr/bin/nm -B configure:5938: checking the name lister (/usr/bin/nm -B) interface configure:5945: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:5948: /usr/bin/nm -B "conftest.o" configure:5951: output 0000000000000000 B some_variable configure:5958: result: BSD nm configure:5961: checking whether ln -s works configure:5965: result: yes configure:5973: checking the maximum length of command line arguments configure:6098: result: 1966080 configure:6115: checking whether the shell understands some XSI constructs configure:6125: result: yes configure:6129: checking whether the shell understands "+=" configure:6135: result: yes configure:6170: checking for /usr/bin/ld option to reload object files configure:6177: result: -r configure:6246: checking for objdump configure:6262: found /usr/bin/objdump configure:6273: result: objdump configure:6305: checking how to recognize dependent libraries configure:6507: result: pass_all configure:6567: checking for ar configure:6583: found /usr/bin/ar configure:6594: result: ar configure:6672: checking for strip configure:6688: found /usr/bin/strip configure:6699: result: strip configure:6771: checking for ranlib configure:6787: found /usr/bin/ranlib configure:6798: result: ranlib configure:6900: checking command to parse /usr/bin/nm -B output from gcc object configure:7018: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:7021: $? = 0 configure:7025: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:7028: $? = 0 configure:7082: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c conftstm.o >&5 configure:7085: $? = 0 configure:7123: result: ok configure:7218: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:7221: $? = 0 configure:7963: checking how to run the C preprocessor configure:7994: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c configure:7994: $? = 0 configure:8008: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c conftest.c:12:28: error: ac_nonexistent.h: No such file or directory configure:8008: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.2" | #define PACKAGE_STRING "netCDF-Fortran 4.2" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.2" | #define TEMP_LARGE "." | /* end confdefs.h. */ | #include configure:8033: result: gcc -E configure:8053: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c configure:8053: $? = 0 configure:8067: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c conftest.c:12:28: error: ac_nonexistent.h: No such file or directory configure:8067: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.2" | #define PACKAGE_STRING "netCDF-Fortran 4.2" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.2" | #define TEMP_LARGE "." | /* end confdefs.h. */ | #include configure:8096: checking for ANSI C header files configure:8116: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:8116: $? = 0 configure:8189: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c >&5 configure:8189: $? = 0 configure:8189: ./conftest configure:8189: $? = 0 configure:8200: result: yes configure:8213: checking for sys/types.h configure:8213: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:8213: $? = 0 configure:8213: result: yes configure:8213: checking for sys/stat.h configure:8213: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:8213: $? = 0 configure:8213: result: yes configure:8213: checking for stdlib.h configure:8213: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:8213: $? = 0 configure:8213: result: yes configure:8213: checking for string.h configure:8213: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:8213: $? = 0 configure:8213: result: yes configure:8213: checking for memory.h configure:8213: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:8213: $? = 0 configure:8213: result: yes configure:8213: checking for strings.h configure:8213: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:8213: $? = 0 configure:8213: result: yes configure:8213: checking for inttypes.h configure:8213: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:8213: $? = 0 configure:8213: result: yes configure:8213: checking for stdint.h configure:8213: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:8213: $? = 0 configure:8213: result: yes configure:8213: checking for unistd.h configure:8213: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:8213: $? = 0 configure:8213: result: yes configure:8227: checking for dlfcn.h configure:8227: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:8227: $? = 0 configure:8227: result: yes configure:8415: checking for objdir configure:8430: result: .libs configure:8701: checking if gcc supports -fno-rtti -fno-exceptions configure:8719: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:8723: $? = 0 configure:8736: result: no configure:8756: checking for gcc option to produce PIC configure:9041: result: -fPIC -DPIC configure:9053: checking if gcc PIC flag -fPIC -DPIC works configure:9071: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -fPIC -DPIC -DPIC conftest.c >&5 configure:9075: $? = 0 configure:9088: result: yes configure:9112: checking if gcc static flag -static works configure:9140: result: no configure:9155: checking if gcc supports -c -o file.o configure:9176: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -o out/conftest2.o conftest.c >&5 configure:9180: $? = 0 configure:9202: result: yes configure:9210: checking if gcc supports -c -o file.o configure:9257: result: yes configure:9290: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:10365: result: yes configure:10402: checking whether -lc should be explicitly linked in configure:10410: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:10413: $? = 0 configure:10428: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:10431: $? = 0 configure:10445: result: no configure:10610: checking dynamic linker characteristics configure:11065: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib -Wl,-rpath -Wl,/foo conftest.c >&5 configure:11065: $? = 0 configure:11291: result: GNU/Linux ld.so configure:11398: checking how to hardcode library paths into programs configure:11423: result: immediate configure:11963: checking whether stripping libraries is possible configure:11968: result: yes configure:12003: checking if libtool supports shared libraries configure:12005: result: yes configure:12008: checking whether to build shared libraries configure:12029: result: yes configure:12032: checking whether to build static libraries configure:12036: result: yes configure:12159: checking if libtool supports shared libraries configure:12161: result: yes configure:12164: checking whether to build shared libraries configure:12184: result: yes configure:12187: checking whether to build static libraries configure:12191: result: yes configure:12205: checking for gfortran option to produce PIC configure:12490: result: -fPIC configure:12499: checking if gfortran PIC flag -fPIC works configure:12517: gfortran -c -O3 -mtune=native -fPIC conftest.f >&5 configure:12521: $? = 0 configure:12534: result: yes configure:12555: checking if gfortran static flag -static works configure:12583: result: no configure:12595: checking if gfortran supports -c -o file.o configure:12616: gfortran -c -O3 -mtune=native -o out/conftest2.o conftest.f >&5 configure:12620: $? = 0 configure:12642: result: yes configure:12647: checking if gfortran supports -c -o file.o configure:12694: result: yes configure:12724: checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:13747: result: yes configure:13890: checking dynamic linker characteristics configure:14499: result: GNU/Linux ld.so configure:14552: checking how to hardcode library paths into programs configure:14577: result: immediate configure:14719: checking if libtool supports shared libraries configure:14721: result: yes configure:14724: checking whether to build shared libraries configure:14744: result: yes configure:14747: checking whether to build static libraries configure:14751: result: yes configure:14777: gfortran -c -O3 -mtune=native conftest.f90 >&5 configure:14780: $? = 0 configure:14908: checking for gfortran option to produce PIC configure:15193: result: -fPIC configure:15202: checking if gfortran PIC flag -fPIC works configure:15220: gfortran -c -O3 -mtune=native -fPIC conftest.f90 >&5 configure:15224: $? = 0 configure:15237: result: yes configure:15258: checking if gfortran static flag -static works configure:15286: result: no configure:15298: checking if gfortran supports -c -o file.o configure:15319: gfortran -c -O3 -mtune=native -o out/conftest2.o conftest.f90 >&5 configure:15323: $? = 0 configure:15345: result: yes configure:15350: checking if gfortran supports -c -o file.o configure:15397: result: yes configure:15427: checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:16450: result: yes configure:16593: checking dynamic linker characteristics configure:17202: result: GNU/Linux ld.so configure:17255: checking how to hardcode library paths into programs configure:17280: result: immediate configure:17336: finding other utilities configure:17342: trying to set fortran flags for this platform configure:17344: checking what FC is set to configure:17346: result: gfortran configure:17394: checking for special C compiler options needed for large files configure:17439: result: no configure:17445: checking for _FILE_OFFSET_BITS value needed for large files configure:17470: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:17470: $? = 0 configure:17502: result: no configure:17586: displaying some results configure:17649: checking for /usr/bin/nm configure:17676: result: /usr/bin/nm -B configure:17689: checking nm flags configure:17694: result: configure:17706: checking for C-equivalent to Fortran routine "SUB" configure:17713: gfortran -c -O3 -mtune=native conftest.f configure:17716: $? = 0 configure:17726: result: sub_ configure:17746: checking for Fortran "byte" configure:17754: gfortran -c -O3 -mtune=native conftest.f configure:17757: $? = 0 configure:17759: result: yes configure:17777: checking for Fortran "integer*2" configure:17785: gfortran -c -O3 -mtune=native conftest.f configure:17788: $? = 0 configure:17790: result: yes configure:17817: checking if Fortran "byte" is C "signed char" configure:17827: gcc -c -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:17830: $? = 0 configure:17833: gfortran -O3 -mtune=native -c conftestf.f configure:17836: $? = 0 configure:17839: gfortran -o conftest -O3 -mtune=native -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftestf.o conftest.o configure:17842: $? = 0 configure:17845: ./conftest configure:17848: $? = 0 configure:17850: result: yes configure:17884: checking if Fortran "byte" is C "short" configure:17894: gcc -c -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:17897: $? = 0 configure:17900: gfortran -O3 -mtune=native -c conftestf.f configure:17903: $? = 0 configure:17906: gfortran -o conftest -O3 -mtune=native -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftestf.o conftest.o configure:17909: $? = 0 configure:17912: ./conftest configure:17915: $? = 1 configure:17928: result: no configure:17951: checking if Fortran "byte" is C "int" configure:17961: gcc -c -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:17964: $? = 0 configure:17967: gfortran -O3 -mtune=native -c conftestf.f configure:17970: $? = 0 configure:17973: gfortran -o conftest -O3 -mtune=native -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftestf.o conftest.o configure:17976: $? = 0 configure:17979: ./conftest configure:17982: $? = 1 configure:17995: result: no configure:18018: checking if Fortran "byte" is C "long" configure:18028: gcc -c -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:18031: $? = 0 configure:18034: gfortran -O3 -mtune=native -c conftestf.f configure:18037: $? = 0 configure:18040: gfortran -o conftest -O3 -mtune=native -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftestf.o conftest.o configure:18043: $? = 0 configure:18046: ./conftest configure:18049: $? = 1 configure:18062: result: no configure:18089: checking if Fortran "integer*2" is C "short" configure:18099: gcc -c -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:18102: $? = 0 configure:18105: gfortran -O3 -mtune=native -c conftestf.f configure:18108: $? = 0 configure:18111: gfortran -o conftest -O3 -mtune=native -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftestf.o conftest.o configure:18114: $? = 0 configure:18117: ./conftest configure:18120: $? = 0 configure:18122: result: yes configure:18156: checking if Fortran "integer*2" is C "int" configure:18166: gcc -c -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:18169: $? = 0 configure:18172: gfortran -O3 -mtune=native -c conftestf.f configure:18175: $? = 0 configure:18178: gfortran -o conftest -O3 -mtune=native -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftestf.o conftest.o configure:18181: $? = 0 configure:18184: ./conftest configure:18187: $? = 1 configure:18200: result: no configure:18223: checking if Fortran "integer*2" is C "long" configure:18233: gcc -c -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:18236: $? = 0 configure:18239: gfortran -O3 -mtune=native -c conftestf.f configure:18242: $? = 0 configure:18245: gfortran -o conftest -O3 -mtune=native -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftestf.o conftest.o configure:18248: $? = 0 configure:18251: ./conftest configure:18254: $? = 1 configure:18267: result: no configure:18292: checking if Fortran "integer" is C "int" configure:18302: gcc -c -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:18305: $? = 0 configure:18308: gfortran -O3 -mtune=native -c conftestf.f configure:18311: $? = 0 configure:18314: gfortran -o conftest -O3 -mtune=native -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftestf.o conftest.o configure:18317: $? = 0 configure:18320: ./conftest configure:18323: $? = 0 configure:18325: result: yes configure:18359: checking if Fortran "real" is C "float" configure:18369: gcc -c -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:18372: $? = 0 configure:18375: gfortran -O3 -mtune=native -c conftestf.f configure:18378: $? = 0 configure:18381: gfortran -o conftest -O3 -mtune=native -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftestf.o conftest.o configure:18384: $? = 0 configure:18387: ./conftest configure:18390: $? = 0 configure:18392: result: yes configure:18426: checking if Fortran "doubleprecision" is C "double" configure:18436: gcc -c -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:18439: $? = 0 configure:18442: gfortran -O3 -mtune=native -c conftestf.f configure:18445: $? = 0 configure:18448: gfortran -o conftest -O3 -mtune=native -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftestf.o conftest.o configure:18451: $? = 0 configure:18454: ./conftest configure:18457: $? = 0 configure:18459: result: yes configure:18487: checking for Fortran-equivalent to netCDF "byte" configure:18495: gfortran -c -O3 -mtune=native conftest.f configure:18498: $? = 0 configure:18509: result: byte configure:18515: checking for Fortran-equivalent to netCDF "short" configure:18523: gfortran -c -O3 -mtune=native conftest.f configure:18526: $? = 0 configure:18537: result: integer*2 configure:18584: checking if Fortran 90 compiler capitalizes .mod filenames configure:18591: gfortran conftest.f90 >&5 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/libgfortranbegin.a(fmain.o): In function `main': (.text+0x26): undefined reference to `MAIN__' collect2: ld returned 1 exit status configure:18594: $? = 1 configure:18602: result: no configure:18623: checking whether extra example tests should be run configure:18631: result: no configure:18644: checking whether a win32 DLL is desired configure:18652: result: no configure:18668: checking types, headers, and functions configure:18674: checking netcdf.h usability configure:18674: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:18674: $? = 0 configure:18674: result: yes configure:18674: checking netcdf.h presence configure:18674: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c configure:18674: $? = 0 configure:18674: result: yes configure:18674: checking for netcdf.h configure:18674: result: yes configure:18686: checking for library containing nc_open configure:18717: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c >&5 /tmp/ccjPQ6jw.o: In function `main': conftest.c:(.text+0xa): undefined reference to `nc_open' collect2: ld returned 1 exit status configure:18717: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.2" | #define PACKAGE_STRING "netCDF-Fortran 4.2" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.2" | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:18717: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 configure:18717: $? = 0 configure:18734: result: -lnetcdf configure:18747: checking for nc_def_opaque configure:18747: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 /tmp/ccLjASfE.o: In function `main': conftest.c:(.text+0xa): undefined reference to `nc_def_opaque' collect2: ld returned 1 exit status configure:18747: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.2" | #define PACKAGE_STRING "netCDF-Fortran 4.2" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.2" | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | /* Define nc_def_opaque to an innocuous variant, in case declares nc_def_opaque. | For example, HP-UX 11i declares gettimeofday. */ | #define nc_def_opaque innocuous_nc_def_opaque | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char nc_def_opaque (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef nc_def_opaque | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_def_opaque (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_nc_def_opaque || defined __stub___nc_def_opaque | choke me | #endif | | int | main () | { | return nc_def_opaque (); | ; | return 0; | } configure:18747: result: no configure:18747: checking for nccreate configure:18747: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 configure:18747: $? = 0 configure:18747: result: yes configure:18747: checking for nc_set_log_level configure:18747: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 /tmp/ccOHOydM.o: In function `main': conftest.c:(.text+0xa): undefined reference to `nc_set_log_level' collect2: ld returned 1 exit status configure:18747: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.2" | #define PACKAGE_STRING "netCDF-Fortran 4.2" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.2" | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_NETCDF_H 1 | #define HAVE_NCCREATE 1 | /* end confdefs.h. */ | /* Define nc_set_log_level to an innocuous variant, in case declares nc_set_log_level. | For example, HP-UX 11i declares gettimeofday. */ | #define nc_set_log_level innocuous_nc_set_log_level | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char nc_set_log_level (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef nc_set_log_level | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_set_log_level (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_nc_set_log_level || defined __stub___nc_set_log_level | choke me | #endif | | int | main () | { | return nc_set_log_level (); | ; | return 0; | } configure:18747: result: no configure:18747: checking for oc_open configure:18747: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 /tmp/ccVMszRQ.o: In function `main': conftest.c:(.text+0xa): undefined reference to `oc_open' collect2: ld returned 1 exit status configure:18747: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.2" | #define PACKAGE_STRING "netCDF-Fortran 4.2" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.2" | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_NETCDF_H 1 | #define HAVE_NCCREATE 1 | /* end confdefs.h. */ | /* Define oc_open to an innocuous variant, in case declares oc_open. | For example, HP-UX 11i declares gettimeofday. */ | #define oc_open innocuous_oc_open | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char oc_open (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef oc_open | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char oc_open (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_oc_open || defined __stub___oc_open | choke me | #endif | | int | main () | { | return oc_open (); | ; | return 0; | } configure:18747: result: no configure:18747: checking for nc_use_parallel_enabled configure:18747: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 /tmp/ccECjcpX.o: In function `main': conftest.c:(.text+0xa): undefined reference to `nc_use_parallel_enabled' collect2: ld returned 1 exit status configure:18747: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.2" | #define PACKAGE_STRING "netCDF-Fortran 4.2" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.2" | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_NETCDF_H 1 | #define HAVE_NCCREATE 1 | /* end confdefs.h. */ | /* Define nc_use_parallel_enabled to an innocuous variant, in case declares nc_use_parallel_enabled. | For example, HP-UX 11i declares gettimeofday. */ | #define nc_use_parallel_enabled innocuous_nc_use_parallel_enabled | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char nc_use_parallel_enabled (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef nc_use_parallel_enabled | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_use_parallel_enabled (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_nc_use_parallel_enabled || defined __stub___nc_use_parallel_enabled | choke me | #endif | | int | main () | { | return nc_use_parallel_enabled (); | ; | return 0; | } configure:18747: result: no configure:18768: checking netCDF v2 API present configure:18770: result: yes configure:18772: checking netCDF-4 present configure:18774: result: no configure:18817: checking for stdlib.h configure:18817: result: yes configure:18827: checking for sys/types.h configure:18827: result: yes configure:18839: checking sys/param.h usability configure:18839: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:18839: $? = 0 configure:18839: result: yes configure:18839: checking sys/param.h presence configure:18839: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c configure:18839: $? = 0 configure:18839: result: yes configure:18839: checking for sys/param.h configure:18839: result: yes configure:18853: checking for dirent.h that defines DIR configure:18872: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:18872: $? = 0 configure:18880: result: yes configure:18893: checking for library containing opendir configure:18924: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 configure:18924: $? = 0 configure:18941: result: none required configure:19008: checking for ANSI C header files configure:19112: result: yes configure:19120: checking for sys/wait.h that is POSIX.1 compatible configure:19146: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19146: $? = 0 configure:19153: result: yes configure:19161: checking whether time.h and sys/time.h may both be included configure:19181: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19181: $? = 0 configure:19188: result: yes configure:19200: checking locale.h usability configure:19200: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking locale.h presence configure:19200: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking for locale.h configure:19200: result: yes configure:19200: checking stdio.h usability configure:19200: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking stdio.h presence configure:19200: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking for stdio.h configure:19200: result: yes configure:19200: checking stdarg.h usability configure:19200: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking stdarg.h presence configure:19200: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking for stdarg.h configure:19200: result: yes configure:19200: checking errno.h usability configure:19200: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking errno.h presence configure:19200: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking for errno.h configure:19200: result: yes configure:19200: checking ctype.h usability configure:19200: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking ctype.h presence configure:19200: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking for ctype.h configure:19200: result: yes configure:19200: checking fcntl.h usability configure:19200: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking fcntl.h presence configure:19200: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking for fcntl.h configure:19200: result: yes configure:19200: checking malloc.h usability configure:19200: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking malloc.h presence configure:19200: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking for malloc.h configure:19200: result: yes configure:19200: checking for stdlib.h configure:19200: result: yes configure:19200: checking for string.h configure:19200: result: yes configure:19200: checking for strings.h configure:19200: result: yes configure:19200: checking for unistd.h configure:19200: result: yes configure:19200: checking for sys/stat.h configure:19200: result: yes configure:19200: checking getopt.h usability configure:19200: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking getopt.h presence configure:19200: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking for getopt.h configure:19200: result: yes configure:19200: checking sys/time.h usability configure:19200: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking sys/time.h presence configure:19200: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking for sys/time.h configure:19200: result: yes configure:19200: checking sys/resource.h usability configure:19200: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking sys/resource.h presence configure:19200: gcc -E -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c configure:19200: $? = 0 configure:19200: result: yes configure:19200: checking for sys/resource.h configure:19200: result: yes configure:19212: checking for vprintf configure:19212: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 conftest.c:79: warning: conflicting types for built-in function 'vprintf' configure:19212: $? = 0 configure:19212: result: yes configure:19218: checking for _doprnt configure:19218: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 /tmp/ccHIKimU.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_doprnt' collect2: ld returned 1 exit status configure:19218: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.2" | #define PACKAGE_STRING "netCDF-Fortran 4.2" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.2" | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_NETCDF_H 1 | #define HAVE_NCCREATE 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDIO_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_CTYPE_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_VPRINTF 1 | /* end confdefs.h. */ | /* Define _doprnt to an innocuous variant, in case declares _doprnt. | For example, HP-UX 11i declares gettimeofday. */ | #define _doprnt innocuous__doprnt | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char _doprnt (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef _doprnt | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char _doprnt (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub__doprnt || defined __stub____doprnt | choke me | #endif | | int | main () | { | return _doprnt (); | ; | return 0; | } configure:19218: result: no configure:19231: checking for stdbool.h that conforms to C99 configure:19316: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19316: $? = 0 configure:19323: result: yes configure:19325: checking for _Bool configure:19325: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19325: $? = 0 configure:19325: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 conftest.c: In function 'main': conftest.c:93: error: expected expression before ')' token configure:19325: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.2" | #define PACKAGE_STRING "netCDF-Fortran 4.2" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.2" | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_NETCDF_H 1 | #define HAVE_NCCREATE 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDIO_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_CTYPE_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_VPRINTF 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((_Bool))) | return 0; | ; | return 0; | } configure:19325: result: yes configure:19347: checking for working alloca.h configure:19364: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 configure:19364: $? = 0 configure:19372: result: yes configure:19380: checking for alloca configure:19417: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 configure:19417: $? = 0 configure:19425: result: yes configure:19537: checking for size_t configure:19537: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19537: $? = 0 configure:19537: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 conftest.c: In function 'main': conftest.c:97: error: expected expression before ')' token configure:19537: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.2" | #define PACKAGE_STRING "netCDF-Fortran 4.2" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.2" | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_NETCDF_H 1 | #define HAVE_NCCREATE 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDIO_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_CTYPE_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_VPRINTF 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:19537: result: yes configure:19548: checking for off_t configure:19548: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19548: $? = 0 configure:19548: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 conftest.c: In function 'main': conftest.c:97: error: expected expression before ')' token configure:19548: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.2" | #define PACKAGE_STRING "netCDF-Fortran 4.2" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.2" | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_NETCDF_H 1 | #define HAVE_NCCREATE 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDIO_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_CTYPE_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_VPRINTF 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((off_t))) | return 0; | ; | return 0; | } configure:19548: result: yes configure:19559: checking for ssize_t configure:19559: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19559: $? = 0 configure:19559: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 conftest.c: In function 'main': conftest.c:97: error: expected expression before ')' token configure:19559: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.2" | #define PACKAGE_STRING "netCDF-Fortran 4.2" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.2" | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_NETCDF_H 1 | #define HAVE_NCCREATE 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDIO_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_CTYPE_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_VPRINTF 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((ssize_t))) | return 0; | ; | return 0; | } configure:19559: result: yes configure:19568: checking for ptrdiff_t configure:19568: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19568: $? = 0 configure:19568: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 conftest.c: In function 'main': conftest.c:98: error: expected expression before ')' token configure:19568: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.2" | #define PACKAGE_STRING "netCDF-Fortran 4.2" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.2" | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_NETCDF_H 1 | #define HAVE_NCCREATE 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDIO_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_CTYPE_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_VPRINTF 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_SSIZE_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((ptrdiff_t))) | return 0; | ; | return 0; | } configure:19568: result: yes configure:19577: checking for uchar configure:19577: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 conftest.c: In function 'main': conftest.c:99: error: 'uchar' undeclared (first use in this function) conftest.c:99: error: (Each undeclared identifier is reported only once conftest.c:99: error: for each function it appears in.) configure:19577: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.2" | #define PACKAGE_STRING "netCDF-Fortran 4.2" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.2" | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_NETCDF_H 1 | #define HAVE_NCCREATE 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDIO_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_CTYPE_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_VPRINTF 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_SSIZE_T 1 | #define HAVE_PTRDIFF_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof (uchar)) | return 0; | ; | return 0; | } configure:19577: result: no configure:19586: checking for longlong configure:19586: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 conftest.c: In function 'main': conftest.c:99: error: 'longlong' undeclared (first use in this function) conftest.c:99: error: (Each undeclared identifier is reported only once conftest.c:99: error: for each function it appears in.) configure:19586: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "netCDF-Fortran" | #define PACKAGE_TARNAME "netcdf-fortran" | #define PACKAGE_VERSION "4.2" | #define PACKAGE_STRING "netCDF-Fortran 4.2" | #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" | #define PACKAGE_URL "" | #define PACKAGE "netcdf-fortran" | #define VERSION "4.2" | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define pgiFortran 1 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NF_INT1_IS_C_SIGNED_CHAR 1 | #define NF_INT2_IS_C_SHORT 1 | #define NF_INT_IS_C_INT 1 | #define NF_REAL_IS_C_FLOAT 1 | #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE_NETCDF_H 1 | #define HAVE_NCCREATE 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDIO_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_CTYPE_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_VPRINTF 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_SSIZE_T 1 | #define HAVE_PTRDIFF_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof (longlong)) | return 0; | ; | return 0; | } configure:19586: result: no configure:19596: checking whether char is unsigned configure:19614: gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include conftest.c >&5 configure:19614: $? = 0 configure:19621: result: no configure:19633: checking size of short configure:19638: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 configure:19638: $? = 0 configure:19638: ./conftest configure:19638: $? = 0 configure:19652: result: 2 configure:19666: checking size of int configure:19671: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 configure:19671: $? = 0 configure:19671: ./conftest configure:19671: $? = 0 configure:19685: result: 4 configure:19699: checking size of long configure:19704: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 configure:19704: $? = 0 configure:19704: ./conftest configure:19704: $? = 0 configure:19718: result: 8 configure:19732: checking size of float configure:19737: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 configure:19737: $? = 0 configure:19737: ./conftest configure:19737: $? = 0 configure:19751: result: 4 configure:19765: checking size of double configure:19770: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 configure:19770: $? = 0 configure:19770: ./conftest configure:19770: $? = 0 configure:19784: result: 8 configure:19798: checking size of off_t configure:19803: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 configure:19803: $? = 0 configure:19803: ./conftest configure:19803: $? = 0 configure:19817: result: 8 configure:19831: checking size of size_t configure:19836: gcc -o conftest -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib conftest.c -lnetcdf >&5 configure:19836: $? = 0 configure:19836: ./conftest configure:19836: $? = 0 configure:19850: result: 8 configure:19917: generating header files and makefiles configure:20097: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by netCDF-Fortran config.status 4.2, which was generated by GNU Autoconf 2.66. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on nbk36.cerm.unifi.it config.status:1284: creating Makefile config.status:1284: creating nf-config config.status:1284: creating netcdf-fortran.pc config.status:1284: creating man4/Makefile config.status:1284: creating fortran/Makefile config.status:1284: creating nf_test/Makefile config.status:1284: creating f90/Makefile config.status:1284: creating examples/Makefile config.status:1284: creating examples/F90/Makefile config.status:1284: creating examples/F77/Makefile config.status:1284: creating config.h config.status:1284: creating fortran/nfconfig1.inc config.status:1512: executing depfiles commands config.status:1512: executing libtool commands ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_char_unsigned=no ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_env_CC_set=set ac_cv_env_CC_value=gcc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value=' -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ ' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value=-I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_F77_set=set ac_cv_env_F77_value=gfortran ac_cv_env_FCFLAGS_set=set ac_cv_env_FCFLAGS_value=' -O3 -mtune=native' ac_cv_env_FC_set=set ac_cv_env_FC_value=gfortran ac_cv_env_FFLAGS_set=set ac_cv_env_FFLAGS_value=' -O3 -mtune=native' ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib ' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_fc_compiler_gnu=yes ac_cv_fc_srcext_f90=none ac_cv_func__doprnt=no ac_cv_func_alloca_works=yes ac_cv_func_nc_def_opaque=no ac_cv_func_nc_set_log_level=no ac_cv_func_nc_use_parallel_enabled=no ac_cv_func_nccreate=yes ac_cv_func_oc_open=no ac_cv_func_vprintf=yes ac_cv_header_ctype_h=yes ac_cv_header_dirent_dirent_h=yes ac_cv_header_dlfcn_h=yes ac_cv_header_errno_h=yes ac_cv_header_fcntl_h=yes ac_cv_header_getopt_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_locale_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_stdarg_h=yes ac_cv_header_stdbool_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdio_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_time_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_sys_wait_h=yes ac_cv_header_time=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cc_gcc_c_o=yes ac_cv_prog_f77_g=yes ac_cv_prog_f90_uppercase_mod=no ac_cv_prog_fc_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_nc_open=-lnetcdf ac_cv_search_opendir='none required' ac_cv_sizeof_double=8 ac_cv_sizeof_float=4 ac_cv_sizeof_int=4 ac_cv_sizeof_long=8 ac_cv_sizeof_off_t=8 ac_cv_sizeof_short=2 ac_cv_sizeof_size_t=8 ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no ac_cv_target=x86_64-unknown-linux-gnu ac_cv_type__Bool=yes ac_cv_type_longlong=no ac_cv_type_off_t=yes ac_cv_type_ptrdiff_t=yes ac_cv_type_size_t=yes ac_cv_type_ssize_t=yes ac_cv_type_uchar=no ac_cv_working_alloca_h=yes am_cv_CC_dependencies_compiler_type=gcc3 ax_cv_f90_modflag=-I lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_NM='/usr/bin/nm -B' lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_c_o_FC=yes lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_pic_works_FC=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_F77=no lt_cv_prog_compiler_static_works_FC=no lt_cv_prog_gnu_ld=yes lt_cv_shlibpath_overrides_runpath=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=1966080 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /mnt/disk2/andrea/bin/AMBER_PARA/amber14/AmberTools/src/netcdf-fortran-4.2/missing --run aclocal-1.11' ALLOCA='' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /mnt/disk2/andrea/bin/AMBER_PARA/amber14/AmberTools/src/netcdf-fortran-4.2/missing --run tar' AR='ar' AUTOCONF='${SHELL} /mnt/disk2/andrea/bin/AMBER_PARA/amber14/AmberTools/src/netcdf-fortran-4.2/missing --run autoconf' AUTOHEADER='${SHELL} /mnt/disk2/andrea/bin/AMBER_PARA/amber14/AmberTools/src/netcdf-fortran-4.2/missing --run autoheader' AUTOMAKE='${SHELL} /mnt/disk2/andrea/bin/AMBER_PARA/amber14/AmberTools/src/netcdf-fortran-4.2/missing --run automake-1.11' AWK='gawk' BUILD_BENCHMARKS_FALSE='' BUILD_BENCHMARKS_TRUE='#' BUILD_DAP_FALSE='' BUILD_DAP_TRUE='#' BUILD_DLL_FALSE='' BUILD_DLL_TRUE='#' BUILD_F90_FALSE='#' BUILD_F90_TRUE='' BUILD_PARALLEL_FALSE='' BUILD_PARALLEL_TRUE='#' BUILD_V2_FALSE='#' BUILD_V2_TRUE='' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS=' -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ ' CPP='gcc -E' CPPFLAGS='-I/mnt/disk2/andrea/bin/AMBER_PARA/amber14/include' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' EXTRA_EXAMPLE_TESTS_FALSE='' EXTRA_EXAMPLE_TESTS_TRUE='#' EXTRA_TESTS_FALSE='' EXTRA_TESTS_TRUE='#' F77='gfortran' FC='gfortran' FCFLAGS=' -O3 -mtune=native' FCFLAGS_f90='' FFLAGS=' -O3 -mtune=native' FGREP='/bin/grep -F' GREP='/bin/grep' HAS_DAP='no' HAS_F90='yes' HAS_NC2='yes' HAS_NC4='no' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LARGE_FILE_TESTS_FALSE='' LARGE_FILE_TESTS_TRUE='#' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='-L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib ' LIBOBJS='' LIBS='-lnetcdf ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAKEINFO='${SHELL} /mnt/disk2/andrea/bin/AMBER_PARA/amber14/AmberTools/src/netcdf-fortran-4.2/missing --run makeinfo' MKDIR_P='/bin/mkdir -p' MOD_FLAG='-I' NC_FLIBS='-lnetcdff -L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib -lnetcdf -lnetcdf ' NC_LIBS='-L/mnt/disk2/andrea/bin/AMBER_PARA/amber14/lib -lnetcdf -lnetcdf ' NM='/usr/bin/nm -B' NMEDIT='' NMFLAGS='' OBJDUMP='objdump' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='netcdf-fortran' PACKAGE_BUGREPORT='support-netcdf@unidata.ucar.edu' PACKAGE_NAME='netCDF-Fortran' PACKAGE_STRING='netCDF-Fortran 4.2' PACKAGE_TARNAME='netcdf-fortran' PACKAGE_URL='' PACKAGE_VERSION='4.2' PATH_SEPARATOR=':' RANLIB='ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' TEST_PARALLEL_FALSE='' TEST_PARALLEL_TRUE='#' UPPER_CASE_MOD_FALSE='' UPPER_CASE_MOD_TRUE='#' USE_LOGGING_FALSE='' USE_LOGGING_TRUE='#' USE_NETCDF4_FALSE='' USE_NETCDF4_TRUE='#' USE_VALGRIND_TESTS_FALSE='' USE_VALGRIND_TESTS_TRUE='#' VERSION='4.2' ac_ct_CC='gcc' ac_ct_DUMPBIN='' ac_ct_F77='' ac_ct_FC='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /mnt/disk2/andrea/bin/AMBER_PARA/amber14/AmberTools/src/netcdf-fortran-4.2/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/mnt/disk2/andrea/bin/AMBER_PARA/amber14' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target='x86_64-unknown-linux-gnu' target_alias='' target_cpu='x86_64' target_os='linux-gnu' target_vendor='unknown' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "netCDF-Fortran" #define PACKAGE_TARNAME "netcdf-fortran" #define PACKAGE_VERSION "4.2" #define PACKAGE_STRING "netCDF-Fortran 4.2" #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu" #define PACKAGE_URL "" #define PACKAGE "netcdf-fortran" #define VERSION "4.2" #define TEMP_LARGE "." #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define pgiFortran 1 #define NF_INT1_T byte #define NF_INT2_T integer*2 #define NF_INT1_IS_C_SIGNED_CHAR 1 #define NF_INT2_IS_C_SHORT 1 #define NF_INT_IS_C_INT 1 #define NF_REAL_IS_C_FLOAT 1 #define NF_DOUBLEPRECISION_IS_C_DOUBLE 1 #define NCBYTE_T byte #define NCSHORT_T integer*2 #define HAVE_NETCDF_H 1 #define HAVE_NCCREATE 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_DIRENT_H 1 #define STDC_HEADERS 1 #define HAVE_SYS_WAIT_H 1 #define TIME_WITH_SYS_TIME 1 #define HAVE_LOCALE_H 1 #define HAVE_STDIO_H 1 #define HAVE_STDARG_H 1 #define HAVE_ERRNO_H 1 #define HAVE_CTYPE_H 1 #define HAVE_FCNTL_H 1 #define HAVE_MALLOC_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_STRINGS_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_GETOPT_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_VPRINTF 1 #define HAVE__BOOL 1 #define HAVE_STDBOOL_H 1 #define HAVE_ALLOCA_H 1 #define HAVE_ALLOCA 1 #define HAVE_SSIZE_T 1 #define HAVE_PTRDIFF_T 1 #define SIZEOF_SHORT 2 #define SIZEOF_INT 4 #define SIZEOF_LONG 8 #define SIZEOF_FLOAT 4 #define SIZEOF_DOUBLE 8 #define SIZEOF_OFF_T 8 #define SIZEOF_SIZE_T 8 configure: exit 0