clearVariables logFile ions91.log # # Monovalent, monoatomic ions using '91 atom types. # The Li+..Cs+ series uses types derived from the # work of Aqvist (see force field documentation), # while IB is a 'fat ion w/ waters' for vacuum use. # i = createAtom Li+ QL 1.0 set i element Li set i position { 0 0 0 } r = createResidue Li+ add r i Li+ = createUnit Li+ add Li+ r saveOff Li+ ./ions91.lib i = createAtom Na+ QN 1.0 set i element Na set i position { 0 0 0 } r = createResidue Na+ add r i Na+ = createUnit Na+ add Na+ r saveOff Na+ ./ions91.lib i = createAtom K+ QK 1.0 set i element K set i position { 0 0 0 } r = createResidue K+ add r i K+ = createUnit K+ add K+ r saveOff K+ ./ions91.lib i = createAtom Rb+ QR 1.0 set i element Rb set i position { 0 0 0 } r = createResidue Rb+ add r i Rb+ = createUnit Rb+ add Rb+ r saveOff Rb+ ./ions91.lib i = createAtom Cs+ QC 1.0 set i element Cs set i position { 0 0 0 } r = createResidue Cs+ add r i Cs+ = createUnit Cs+ add Cs+ r saveOff Cs+ ./ions91.lib i = createAtom Cl- IM -1.0 set i element Cl set i position { 0 0 0 } r = createResidue Cl- add r i Cl- = createUnit Cl- add Cl- r saveOff Cl- ./ions91.lib i = createAtom IB IB 1.0 set i element Cs set i position { 0 0 0 } r = createResidue IB add r i IB = createUnit IB add IB r saveOff IB ./ions91.lib quit