1> MMP-1 [Ligands aligned onto 966C] (4)
966C.1CGL_lig.pdb 966C.1HFC_lig.pdb 966C.2TCL_lig.pdb 966C_lig.pdb

2> MMP-3 [Ligands aligned onto 1HY7] (20)
1HY7.1B3D_lig.pdb 1HY7.1BQO_lig.pdb 1HY7.1CIZ_lig.pdb 1HY7.1D8F_lig.pdb 1HY7.1G49_lig.pdb 1HY7.1SLN_lig.pdb
1HY7.2USN_lig.pdb 1HY7.1B8Y_lig.pdb 1HY7.1C3I_lig.pdb 1HY7.1D5J_lig.pdb 1HY7.1D8M_lig.pdb 1HY7.1G4K_lig.pdb
1HY7.1USN_lig.pdb 1HY7.1BIW_lig.pdb 1HY7.1CAQ_lig.pdb 1HY7.1D7X_lig.pdb 1HY7.1G05_lig.pdb 
1HY7.1HFS_lig.pdb 1HY7.2D1O_lig.pdb 1HY7_lig.pdb

3> MMP-7 [Ligands aligned onto 1MMQ] (3)
1MMQ.1MMP_lig.pdb 1MMQ.1MMR_lig.pdb 1MMQ_lig.pdb

4> MMP-8 [Ligands aligned onto 1I76] (18)
1I76.1A85_lig.pdb 1I76.1I73_lig.pdb 1I76.1JAP_lig.pdb 1I76.1JJ9_lig.pdb 1I76.1MNC_lig.pdb 1I76.1ZVX_lig.pdb
1I76.1A86_lig.pdb 1I76.1JAN_lig.pdb 1I76.1JAQ_lig.pdb 1I76.1KBC_lig.pdb 1I76.1ZP5_lig.pdb 1I76.2OY2_lig.pdb
1I76.1BZS_lig.pdb 1I76.1JAO_lig.pdb 1I76.1JH1_lig.pdb 1I76.1MMB_lig.pdb 1I76.1ZS0_lig.pdb 1I76_lig.pdb

5> MMP-12 [Ligands aligned onto 1Y93] (6)
1Y93.1JIZ_lig.pdb 1Y93.1JK3_lig.pdb 1Y93.1RMZ_lig.pdb 1Y93.1ROS_lig.pdb 1Y93.2OXW_lig.pdb 1Y93_lig.pdb

6> MMP-13 [Ligands aligned onto 830C] (10)
830C.1CXV_lig.pdb 830C.1XUD_lig.pdb 830C.1YOU_lig.pdb 830C.2D1N_lig.pdb 830C.456C_lig.pdb
830C.1XUC_lig.pdb 830C.1XUR_lig.pdb 830C.1ZTQ_lig.pdb 830C.2OW9_lig.pdb 830C_lig.pdb

7> TNF-ALPHA CONVERTING ENZYME [Ligands aligned onto 2DDF] (6)
2DDF.1BKC_lig.pdb 2DDF.1ZXC_lig.pdb 2DDF.2A8H_lig.pdb 2DDF.2FV5_lig.pdb 2DDF.2FV9_lig.pdb 2DDF_lig.pdb

8> ADAMALYSIN II [Ligands aligned onto 4AIG] (3)
4AIG.2AIG_lig.pdb 4AIG.3AIG_lig.pdb 4AIG_lig.pdb

9> Trypsin [] (7)
1PPH_lig.pdb 1TNH_lig.pdb 1TNI_lig.pdb 1TNJ_lig.pdb 1TNK_lig.pdb 1TNL_lig.pdb
3PTB_lig.pdb

10> Trypsin [Peters et al. J. Chem. Theory Comput. (2006) vol. 2 (2) pp. 383-399] (96)
P0XX_lig.pdb

11> Carboxypeptidase A [] (3)
1CBX_lig.pdb 2CTC_lig.pdb 3CPA_lig.pdb

12> Glycogen Phosphorylase [] (4)
1GPY_lig.pdb 3GPB_lig.pdb 4GPB_lig.pdb 5GPB_lig.pdb

13> Immunoglobin [] (5)
1DBB_lig.pdb 1DBJ_lig.pdb 1DBK_lig.pdb 1DBM_lig.pdb 2DBL_lig.pdb

14> Streptavidin [] (6)
1SRE_lig.pdb 1SRF_lig.pdb 1SRG_lig.pdb 1SRH_lig.pdb 1SRI_lig.pdb 1SRJ_lig.pdb

15> DHFR [] (2)
1DHF_lig.pdb 4DFR_lig.pdb

16> Estrogen Receptor [] (2)
1ERR_lig.pdb 3ERT_lig.pdb

17> PPAR Gamma [] (2)
1FM6_lig.pdb 1FM9_lig.pdb

18> Human Carbonic Anhydrase [] (40)
1A42_lig.pdb 1BN1_lig.pdb 1BN3_lig.pdb 1BN4_lig.pdb 1BNM_lig.pdb 1BNN_lig.pdb
1BNQ_lig.pdb 1BNT_lig.pdb 1BNU_lig.pdb 1BNV_lig.pdb 1BNW_lig.pdb 1CIL_lig.pdb
1CIM_lig.pdb 1CIN_lig.pdb 1CNX_lig.pdb 1EOU_lig.pdb 1G1D_lig.pdb 1G52_lig.pdb
1G53_lig.pdb 1G54_lig.pdb 1I8Z_lig.pdb 1I90_lig.pdb 1I91_lig.pdb 1IF4_lig.pdb
1IF5_lig.pdb 1IF6_lig.pdb 1IF7_lig.pdb 1IF8_lig.pdb 1IF9_lig.pdb 1KWQ_lig.pdb
1KWR_lig.pdb 1OKL_lig.pdb 1OKM_lig.pdb 1OKN_lig.pdb 1OQ5_lig.pdb 1TTM_lig.pdb
1XPZ_lig.pdb 1XQ0_lig.pdb 1YDA_lig.pdb 1ZE8_lig.pdb

19> Thrombin [] (2)
1DWD_lig.pdb 1DWE_lig.pdb

20> Elastase [] (5)
1ELA_lig.pdb 1ELB_lig.pdb 1ELC_lig.pdb 1ELD_lig.pdb 1ELE_lig.pdb

21> Thermolysin [] (7)
1TLP_lig.pdb 1TMN_lig.pdb 2TMN_lig.pdb 3TMN_lig.pdb 4TLN_lig.pdb 4TMN_lig.pdb
5TMN_lig.pdb

22> HIV-1 PROTEASE [] (1)
1HIV_lig.pdb

23> Endothiapepsin [] (5)
2ER7_lig.pdb 4ER1_lig.pdb 4ER2_lig.pdb 5ER1_lig.pdb 5ER2_lig.pdb

24> Human Rhinovirus receptors [] (4)
2R04_lig.pdb 2R06_lig.pdb 2RR1_lig.pdb 2RS3_lig.pdb