molecule m; float m_xyz[36]; float grad[36]; float ier; m = getpdb("NMA.pdb"); readparm(m, "NMA_scee+scnb.prmtop"); mm_options( "ntpr=1, gb=1, cut=99.0, diel=C, e_debug=0 "); mme_init( m, NULL, "::Z", m_xyz, NULL); setxyz_from_mol( m, NULL, m_xyz ); ier = mme(m_xyz, grad, 0); mme_timer();