-I: Adding /home3/obiwan/jwang/research/amber/amber8/dat/leap/prep to search path.
-I: Adding /home3/obiwan/jwang/research/amber/amber8/dat/leap/lib to search path.
-I: Adding /home3/obiwan/jwang/research/amber/amber8/dat/leap/parm to search path.
-I: Adding /home3/obiwan/jwang/research/amber/amber8/dat/leap/cmd to search path.
-s: Ignoring startup file: leaprc
-f: Source leap.in.

Welcome to LEaP!
Sourcing: ./leap.in
----- Source: /home3/obiwan/jwang/research/amber/amber8/dat/leap/cmd/leaprc.gaff
----- Source of /home3/obiwan/jwang/research/amber/amber8/dat/leap/cmd/leaprc.gaff done
Log file: ./leap.log
Loading parameters: /home3/obiwan/jwang/research/amber/amber8/dat/leap/parm/gaff.dat
Loading parameters: ./frcmod
Reading force field mod type file (frcmod)
Loading Prep file: ./fluorescein.prepin
Checking Unit.
WARNING: The unperturbed charge of the unit: -2.000100 is not zero.

 -- ignoring the warning.

Building topology.
Building atom parameters.
Building bond parameters.
Building angle parameters.
Building proper torsion parameters.
Building improper torsion parameters.
old PREP-specified impropers:
 <FLR 1>:  C6   C2   C1   H26 
 <FLR 1>:  C1   C3   C2   O15 
 <FLR 1>:  C2   C4   C3   H27 
 <FLR 1>:  C5   C3   C4   H28 
 <FLR 1>:  C6   C4   C5   C7  
 <FLR 1>:  C5   C1   C6   O10 
 <FLR 1>:  C14  C8   C9   O10 
 <FLR 1>:  C13  C9   C14  H31 
 <FLR 1>:  C14  C12  C13  O16 
 <FLR 1>:  C13  C11  C12  H30 
 <FLR 1>:  C12  C8   C11  H29 
 <FLR 1>:  C7   C9   C8   C11 
 <FLR 1>:  C5   C21  C7   C8  
 <FLR 1>:  C20  C22  C21  C7  
 <FLR 1>:  C21  C25  C20  H32 
 <FLR 1>:  C20  C24  C25  H35 
 <FLR 1>:  C25  C23  C24  H34 
 <FLR 1>:  C24  C22  C23  H33 
 <FLR 1>:  C17  C21  C22  C23 
 <FLR 1>:  C22  O19  C17  O18 
 total 2 improper torsions applied
 20 improper torsions in old prep form
Building H-Bond parameters.
Not Marking per-residue atom chain types.
Marking per-residue atom chain types.
 (no restraints)
	Quit