-I: Adding /home/jwang/git/amber/dat/leap/prep to search path.
-I: Adding /home/jwang/git/amber/dat/leap/lib to search path.
-I: Adding /home/jwang/git/amber/dat/leap/parm to search path.
-I: Adding /home/jwang/git/amber/dat/leap/cmd to search path.
-s: Ignoring startup file: leaprc
-f: Source leap_bcc.in.

Welcome to LEaP!
Sourcing: ./leap_bcc.in
----- Source: /home/jwang/git/amber/dat/leap/cmd/leaprc.gaff
----- Source of /home/jwang/git/amber/dat/leap/cmd/leaprc.gaff done
Log file: ./leap.log
Loading parameters: /home/jwang/git/amber/dat/leap/parm/gaff.dat
Reading title:
AMBER General Force Field for organic molecules (Version 1.6, September 2013)
Loading parameters: ./frcmod_bcc
Reading force field modification type file (frcmod)
Reading title:
remark goes here
Loading Mol2 file: ./nad_bcc.mol2
Reading MOLECULE named MOL
Checking Unit.
WARNING: The unperturbed charge of the unit: -0.999000 is not zero.

 -- ignoring the warning.

Building topology.
Building atom parameters.
Building bond parameters.
Building angle parameters.
Building proper torsion parameters.
Building improper torsion parameters.
--Impropers:
  1	C10<MOL> - H10<MOL> - N2<MOL> - H11<MOL>
  1	C16<MOL> - C17<MOL> - N3<MOL> - C21<MOL>
  1	C17<MOL> - C19<MOL> - C20<MOL> - N7<MOL>
  1	C19<MOL> - H22<MOL> - N6<MOL> - H23<MOL>
  1	C5<MOL> - C6<MOL> - N1<MOL> - C11<MOL>
  1	C6<MOL> - C8<MOL> - C7<MOL> - H8<MOL>
  1	C7<MOL> - C9<MOL> - C8<MOL> - H9<MOL>
  1	C8<MOL> - C10<MOL> - C9<MOL> - C11<MOL>
  1	C9<MOL> - N2<MOL> - C10<MOL> - O3<MOL>
  1	N1<MOL> - C7<MOL> - C6<MOL> - H7<MOL>
  1	N1<MOL> - C9<MOL> - C11<MOL> - H12<MOL>
  1	N3<MOL> - N4<MOL> - C17<MOL> - C20<MOL>
  1	N3<MOL> - N7<MOL> - C21<MOL> - H24<MOL>
  1	N4<MOL> - N5<MOL> - C18<MOL> - H21<MOL>
  1	N5<MOL> - N6<MOL> - C19<MOL> - C20<MOL>
 total 15 improper torsions applied
Building H-Bond parameters.
Incorporating Non-Bonded adjustments.
Not Marking per-residue atom chain types.
Marking per-residue atom chain types.
  (Residues lacking connect0/connect1 - 
   these don't have chain types marked:

	res	total affected

	MOL	1
  )
 (no restraints)
	Quit