X-PLOR: V3.5 user: on: sgi at: 10-Feb-94 16:23:57 Author: Axel T. Brunger Copyright: 1988-94 (Yale University), 1987 (Harvard University) X-PLOR> remarks file xtalrefine/rigid.inp X-PLOR> remarks Rigid-body refinement against the XREF term X-PLOR> X-PLOR>{===>} structure @../generate/generate.psf end {*Read structure file.*} ASSFIL: file ../generate/generate.psf opened. STRUcture>PSF REMARKS FILENAME="generate.psf" REMARKS TOPH19.pep -MACRO for protein sequence REMARKS DATE:08-Feb-94 18:06:14 created by user: xplor XPLOR: current counts (number in parenthesis is maximum) NATOM= 681(MAXA= 16000) NBOND= 695(MAXB= 16000) NTHETA= 1002(MAXT= 24000) NGRP= 80(MAXGRP= 16000) NPHI= 390(MAXP= 30000) NIMPHI= 336(MAXIMP= 8000) NDON= 123(MAXPAD= 4000) NACC= 116(MAXPAD= 4000) NNB= 0(MAXNB= 3000) STRUcture> end {*Read structure file.*} X-PLOR> X-PLOR>{===>} coor @prepstage.pdb {*Read coordinates.*} ASSFIL: file prepstage.pdb opened. COOR>REMARK FILENAME="prepstage.pdb" COOR>REMARK TOPH19.pep -MACRO for protein sequence COOR>REMARK DATE:10-Feb-94 14:42:57 created by user: COOR>ATOM 1 CB ASP 1 4.392 42.124 13.191 1.00 15.00 COOR>ATOM 2 CG ASP 1 4.829 41.149 14.220 1.00 15.00 X-PLOR> {*Read coordinates.*} X-PLOR> X-PLOR> flags FLAGS> exclude * include xref {* In this example we use the XREF term only.*} FLAGS> ? EFLAGS: the following energy flags are set EFLAGS: XREF FLAGS> end X-PLOR> X-PLOR> X-PLOR> xrefine XREFINE> XREFINE>{===>} XREFINE> a=61.76 b=40.73 c=26.74 alpha=90.0 beta=90.0 gamma=90.0 {*Unit cell.*} XREFINE> XREFINE>{===>} XREFINE> symmetry=(x,y,z) {*Symmetry operators for space *} XREFINE> symmetry=(-x+1/2,-y,z+1/2) {*group P212121; notation as in*} XREFINE> symmetry=(-x,y+1/2,-z+1/2) {*Int. Tables. *} XREFINE> symmetry=(x+1/2,-y+1/2,-z) XREFINE> XREFINE> SCATter ( chemical C* ) SELRPN: 345 atoms have been selected out of 681 a1= 2.31000 20.8439 1.02000 10.2075 1.58860 .568700 .865000 51.6512 .215600 XREFINE> SCATter ( chemical N* ) SELRPN: 93 atoms have been selected out of 681 a1= 12.2126 .005700 3.13220 9.89330 2.01250 28.9975 1.16630 .582600 -11.529 XREFINE> SCATter ( chemical O* ) SELRPN: 116 atoms have been selected out of 681 a1= 3.04850 13.2771 2.28680 5.70110 1.54630 .323900 .867000 32.9089 .250800 XREFINE> SCATter ( chemical S* ) SELRPN: 4 atoms have been selected out of 681 a1= 6.90530 1.46790 5.20340 22.2151 1.43790 .253600 1.58630 56.1720 .866900 XREFINE> SCATter ( chemical P* ) SELRPN: 0 atoms have been selected out of 681 a1= 6.43450 1.90670 4.17910 27.1570 1.78000 0.52600 1.49080 68.1645 1.11490 XREFINE> SCATter ( chemical FE* ) SELRPN: 0 atoms have been selected out of 681 a1= 11.1764 4.61470 7.38630 0.30050 3.39480 11.6729 0.07240 38.5566 0.97070 XREFINE> XREFINE>{===>} XREFINE> nreflections=15000 XREFIN: allocating space for 15000 reflections. XREFINE> reflection @amy.fob end {*Read reflections.*} ASSFIL: file amy.fob opened. REFLection> index 0 0 2 fobs= 40.4 sigma= 0.3 XRRR2: 3788 new reflections have been added. XREFINE> XREFINE>{===>} XREFINE> resolution 5.0 2.0 {*Resolution range.*} XREFINE> XREFINE> reduce XREDUC: mapping reflections into standard asymmetric unit. Info: obsolete command. Reflections are always reduced. XREFINE> do amplitude ( fobs = fobs * heavy(fobs - 2.0*sigma)) {*Sigma cutoff.*} XREFIN: selected reflections will be sorted by index. XRTEST: number of selected reflections 3097 XREFINE> fwind=0.1=100000 XREFINE> XREFINE> method=FFT XREFINE> XREFINE> fft XFFT> memory=1000000 XFFT> end XREFINE> XREFINE> XREFINE> tolerance=0.0 lookup=false {* These options are required for the *} XREFINE> {* minimizer.*} XREFINE> XREFINE> wa=10000 {* Use this weight if the only active *} XREFINE> {* energy term is XREF, otherwise, use*} XREFINE> {* the weight obtained from the *} XREFINE> {* "check.inp" protocol. *} XREFINE> end X-PLOR> X-PLOR> X-PLOR> minimize rigid RIGID> RIGID> nstep=40 {*Do 40-step rigid-body*} RIGID> {*minimization. *} RIGID> RIGID> drop=10.0 {*Expected initial drop in energy.*} RIGID> RIGID> group=( resid 1:30 ) {*Select two rigid groups.*} SELRPN: 280 atoms have been selected out of 681 RIGID> group=( resid 31:70 ) SELRPN: 361 atoms have been selected out of 681 RIGID> RIGID> end XREFIN: selected reflections will be sorted by index. XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.143 R= 0.362 --------------- cycle= 1 -------------------------------------------------- | group= 1 rot/tran=( 0.00 0.00 0.00 0.00 0.00 0.00) | | group= 2 rot/tran=( 0.00 0.00 0.00 0.00 0.00 0.00) | | Etotal =1461.347 grad(E)=4.983 E(XREF)=1461.347 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.143 R= 0.361 --------------- cycle= 2 -------------------------------------------------- | group= 1 rot/tran=( 0.00 0.00 0.00 -0.01 -0.02 -0.03) | | group= 2 rot/tran=( 0.00 0.00 0.00 0.00 0.01 -0.01) | | Etotal =1454.193 grad(E)=4.950 E(XREF)=1454.193 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.361 --------------- cycle= 3 -------------------------------------------------- | group= 1 rot/tran=( 0.00 0.00 0.00 -0.03 -0.04 -0.06) | | group= 2 rot/tran=( 0.00 0.00 0.00 0.01 0.03 -0.02) | | Etotal =1451.867 grad(E)=4.958 E(XREF)=1451.867 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 4 -------------------------------------------------- | group= 1 rot/tran=( -0.01 0.00 -0.01 -0.02 -0.04 -0.06) | | group= 2 rot/tran=( 0.01 0.00 -0.01 0.01 0.03 -0.02) | | Etotal =1451.365 grad(E)=4.955 E(XREF)=1451.365 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 5 -------------------------------------------------- | group= 1 rot/tran=( -0.01 0.00 -0.01 -0.02 -0.04 -0.06) | | group= 2 rot/tran=( 0.01 0.00 -0.01 0.01 0.03 -0.02) | | Etotal =1451.364 grad(E)=4.955 E(XREF)=1451.364 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.143 R= 0.360 --------------- cycle= 6 -------------------------------------------------- | group= 1 rot/tran=( -0.03 0.01 -0.01 -0.01 -0.04 -0.07) | | group= 2 rot/tran=( 0.02 0.00 -0.01 0.01 0.03 -0.03) | | Etotal =1451.220 grad(E)=4.959 E(XREF)=1451.220 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 7 -------------------------------------------------- | group= 1 rot/tran=( -0.02 0.01 -0.01 -0.01 -0.04 -0.06) | | group= 2 rot/tran=( 0.01 0.00 -0.01 0.01 0.03 -0.03) | | Etotal =1451.116 grad(E)=4.957 E(XREF)=1451.116 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 8 -------------------------------------------------- | group= 1 rot/tran=( -0.03 0.01 -0.01 -0.02 -0.04 -0.06) | | group= 2 rot/tran=( 0.02 0.00 -0.01 0.01 0.03 -0.03) | | Etotal =1450.792 grad(E)=4.952 E(XREF)=1450.792 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.361 --------------- cycle= 9 -------------------------------------------------- | group= 1 rot/tran=( -0.04 0.02 -0.02 -0.02 -0.04 -0.06) | | group= 2 rot/tran=( 0.02 0.01 -0.02 -0.01 0.03 -0.02) | | Etotal =1450.866 grad(E)=4.951 E(XREF)=1450.866 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 10 -------------------------------------------------- | group= 1 rot/tran=( -0.03 0.01 -0.01 -0.02 -0.04 -0.06) | | group= 2 rot/tran=( 0.02 0.00 -0.01 0.00 0.03 -0.03) | | Etotal =1450.729 grad(E)=4.951 E(XREF)=1450.729 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 11 -------------------------------------------------- | group= 1 rot/tran=( -0.06 0.02 -0.02 -0.02 -0.03 -0.06) | | group= 2 rot/tran=( 0.03 0.01 -0.02 0.00 0.03 -0.02) | | Etotal =1450.020 grad(E)=4.949 E(XREF)=1450.020 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.143 R= 0.360 --------------- cycle= 12 -------------------------------------------------- | group= 1 rot/tran=( -0.11 0.05 -0.04 -0.02 -0.03 -0.05) | | group= 2 rot/tran=( 0.06 0.02 -0.05 0.01 0.03 -0.02) | | Etotal =1449.405 grad(E)=4.950 E(XREF)=1449.405 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.359 --------------- cycle= 13 -------------------------------------------------- | group= 1 rot/tran=( -0.19 0.09 -0.08 -0.03 -0.05 -0.07) | | group= 2 rot/tran=( 0.11 0.03 -0.09 0.01 0.03 -0.03) | | Etotal =1448.681 grad(E)=4.961 E(XREF)=1448.681 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 14 -------------------------------------------------- | group= 1 rot/tran=( -0.16 0.07 -0.07 -0.03 -0.04 -0.06) | | group= 2 rot/tran=( 0.09 0.02 -0.07 0.01 0.03 -0.02) | | Etotal =1448.598 grad(E)=4.955 E(XREF)=1448.598 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 15 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.00 0.04 -0.03) | | Etotal =1448.660 grad(E)=4.955 E(XREF)=1448.660 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 16 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.09 0.03 -0.08 0.01 0.03 -0.03) | | Etotal =1448.436 grad(E)=4.952 E(XREF)=1448.436 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 17 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.457 grad(E)=4.955 E(XREF)=1448.457 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 18 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.402 grad(E)=4.954 E(XREF)=1448.402 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 19 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.358 grad(E)=4.954 E(XREF)=1448.358 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 20 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.369 grad(E)=4.955 E(XREF)=1448.369 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 21 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.357 grad(E)=4.954 E(XREF)=1448.357 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 22 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.372 grad(E)=4.954 E(XREF)=1448.372 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 23 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.357 grad(E)=4.954 E(XREF)=1448.357 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 24 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.357 grad(E)=4.954 E(XREF)=1448.357 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 25 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.357 grad(E)=4.954 E(XREF)=1448.357 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 26 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.356 grad(E)=4.954 E(XREF)=1448.356 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 27 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.356 grad(E)=4.954 E(XREF)=1448.356 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 28 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.356 grad(E)=4.954 E(XREF)=1448.356 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 29 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.357 grad(E)=4.954 E(XREF)=1448.357 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 30 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.356 grad(E)=4.954 E(XREF)=1448.356 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 31 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.357 grad(E)=4.954 E(XREF)=1448.357 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 32 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.356 grad(E)=4.954 E(XREF)=1448.356 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 33 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.356 grad(E)=4.954 E(XREF)=1448.356 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 34 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.357 grad(E)=4.954 E(XREF)=1448.357 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 35 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.356 grad(E)=4.954 E(XREF)=1448.356 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 36 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.357 grad(E)=4.954 E(XREF)=1448.357 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 37 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.356 grad(E)=4.954 E(XREF)=1448.356 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 38 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.356 grad(E)=4.954 E(XREF)=1448.356 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 39 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.356 grad(E)=4.954 E(XREF)=1448.356 | ------------------------------------------------------------------------------- XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 40 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.356 grad(E)=4.954 E(XREF)=1448.356 | ------------------------------------------------------------------------------- ZXCGR: NSTEP limit reached XRTEST: number of selected reflections 3097 XRFILL: #scatt.= 558 #anomalous= 0 #special pos.= 0 occupancies=1 XFFT: using grid [ 96, 64, 40] and sublattice [ 96( 97), 64( 65), 40] TRRESI: Fobs/Fcalc scale= 0.142 R= 0.360 --------------- cycle= 41 -------------------------------------------------- | group= 1 rot/tran=( -0.17 0.08 -0.07 -0.03 -0.04 -0.07) | | group= 2 rot/tran=( 0.10 0.03 -0.08 0.01 0.04 -0.03) | | Etotal =1448.356 grad(E)=4.954 E(XREF)=1448.356 | ------------------------------------------------------------------------------- RIGID: main coordinates set to best minimum X-PLOR> X-PLOR> write coordinates output=rigid.pdb end {*Write final coordinates.*} ASSFIL: file rigid.pdb opened. X-PLOR> X-PLOR> stop CSTACK: size= 40000 used= 0 current= 0 HEAP: maximum use= 1071078 current use= 0 X-PLOR: total CPU time= 335.7700 s X-PLOR: entry time at 16:23:57 10-Feb-94 X-PLOR: exit time at 16:29:39 10-Feb-94