#ifndef OPENMM_DRUDEINTEGRATOR_H_ #define OPENMM_DRUDEINTEGRATOR_H_ /* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008-2013 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "openmm/Integrator.h" #include "openmm/Kernel.h" #include "openmm/internal/windowsExportDrude.h" namespace OpenMM { /** * A base class to encapsulate features common to Drude integrators. */ class OPENMM_EXPORT_DRUDE DrudeIntegrator : public Integrator { public: /** * Create a DrudeSCFIntegrator. * * @param stepSize the step size with which to integrator the system (in picoseconds) */ DrudeIntegrator(double stepSize) {}; /** * Advance a simulation through time by taking a series of time steps. * * @param steps the number of time steps to take */ virtual void step(int steps) override {}; /** * Get the temperature of the heat bath applied to internal coordinates of Drude particles (in Kelvin). * * @return the temperature of the heat bath, measured in Kelvin */ double getDrudeTemperature() const { return drudeTemperature; } /** * Set the temperature of the heat bath applied to internal coordinates of Drude particles (in Kelvin). * * @param temp the temperature of the heat bath, measured in Kelvin */ void setDrudeTemperature(double temp) { drudeTemperature = temp; } /** * Get the maximum distance a Drude particle can ever move from its parent particle, measured in nm. This is implemented * with a hard wall constraint. If this distance is set to 0 (the default), the hard wall constraint is omitted. */ double getMaxDrudeDistance() const; /** * Set the maximum distance a Drude particle can ever move from its parent particle, measured in nm. This is implemented * with a hard wall constraint. If this distance is set to 0 (the default), the hard wall constraint is omitted. */ void setMaxDrudeDistance(double distance); /** * Set the random number seed. The precise meaning of this parameter is undefined, and is left up * to each Platform to interpret in an appropriate way. It is guaranteed that if two simulations * are run with different random number seeds, the sequence of random forces will be different. On * the other hand, no guarantees are made about the behavior of simulations that use the same seed. * In particular, Platforms are permitted to use non-deterministic algorithms which produce different * results on successive runs, even if those runs were initialized identically. * * If seed is set to 0 (which is the default value assigned), a unique seed is chosen when a Context * is created from this Force. This is done to ensure that each Context receives unique random seeds * without you needing to set them explicitly. */ void setRandomNumberSeed(int seed) { randomNumberSeed = seed; } /** * Get the random number seed. See setRandomNumberSeed() for details. */ int getRandomNumberSeed() const { return randomNumberSeed; } protected: /** * This will be called by the Context when it is created. It informs the Integrator * of what context it will be integrating, and gives it a chance to do any necessary initialization. * It will also get called again if the application calls reinitialize() on the Context. */ virtual void initialize(ContextImpl& context) override {}; /** * This will be called by the Context when it is destroyed to let the Integrator do any necessary * cleanup. It will also get called again if the application calls reinitialize() on the Context. */ virtual void cleanup() override {}; /** * Get the names of all Kernels used by this Integrator. */ virtual std::vector getKernelNames() override { return std::vector(); } /** * Compute the kinetic energy of the system at the current time. */ virtual double computeKineticEnergy() override { return 0; } /** * Return a list of velocities normally distributed around a target temperature, with the Drude * temperatures assigned according to the Drude temperature assigned to the integrator. * * @param system the system whose velocities are to be initialized. * @param temperature the target temperature in Kelvin. * @param randomSeed the random number seed to use when selecting velocities */ virtual std::vector getVelocitiesForTemperature(const System &system, double temperature, int randomSeed) const override; int randomNumberSeed; double drudeTemperature, maxDrudeDistance; }; } // namespace OpenMM #endif /*OPENMM_DRUDEINTEGRATOR_H_*/