#ifndef OPENMM_DRUDESCFINTEGRATOR_H_ #define OPENMM_DRUDESCFINTEGRATOR_H_ /* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2008-2013 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "openmm/DrudeIntegrator.h" #include "openmm/Kernel.h" #include "openmm/internal/windowsExportDrude.h" namespace OpenMM { /** * This is a leap-frog Verlet Integrator that simulates systems with Drude particles. It uses the * self-consistent field (SCF) method: at every time step, the positions of Drude particles are * adjusted to minimize the potential energy. * * This Integrator requires the System to include a DrudeForce, which it uses to identify the Drude * particles. */ class OPENMM_EXPORT_DRUDE DrudeSCFIntegrator : public DrudeIntegrator { public: /** * Create a DrudeSCFIntegrator. * * @param stepSize the step size with which to integrator the system (in picoseconds) */ DrudeSCFIntegrator(double stepSize); /** * Get the error tolerance to use when minimizing the potential energy. This roughly corresponds * to the maximum allowed force magnitude on the Drude particles after minimization. * * @return the error tolerance to use, measured in kJ/mol/nm */ double getMinimizationErrorTolerance() const { return tolerance; } /** * Set the error tolerance to use when minimizing the potential energy. This roughly corresponds * to the maximum allowed force magnitude on the Drude particles after minimization. * * @param tol the error tolerance to use, measured in kJ/mol/nm */ void setMinimizationErrorTolerance(double tol) { tolerance = tol; } /** * Advance a simulation through time by taking a series of time steps. * * @param steps the number of time steps to take */ void step(int steps) override; protected: /** * This will be called by the Context when it is created. It informs the Integrator * of what context it will be integrating, and gives it a chance to do any necessary initialization. * It will also get called again if the application calls reinitialize() on the Context. */ void initialize(ContextImpl& context) override; /** * This will be called by the Context when it is destroyed to let the Integrator do any necessary * cleanup. It will also get called again if the application calls reinitialize() on the Context. */ void cleanup() override; /** * Get the names of all Kernels used by this Integrator. */ std::vector getKernelNames() override; /** * Compute the kinetic energy of the system at the current time. */ double computeKineticEnergy() override; private: double tolerance; Kernel kernel; }; } // namespace OpenMM #endif /*OPENMM_DRUDESCFINTEGRATOR_H_*/