Grey White Surface 2012


Compute a spherical mesh of the cortical surface

Description

This treatment yields a spherical mesh of the cortical surface for each hemisphere. This mesh corresponds to the grey/white interface. This mesh can be inflated for visualization purpose: (cf Ana Inflate Cortical Surface).

Parameters

Side: Choice ( input )
Left, Right or Both Hemispheres
mri_corrected: T1 MRI Bias Corrected ( input )
histo_analysis: Histo Analysis ( input )
left_grey_white: Left Grey White Mask ( input )
classification (grey=100, white=200)
right_grey_white: Right Grey White Mask ( input )
classification (grey=100, white=200)
left_hemi_cortex: Left CSF+GREY Mask ( output )
right_hemi_cortex: Right CSF+GREY Mask ( output )
left_white_mesh: Left Hemisphere White Mesh ( output )
right_white_mesh: Right Hemisphere White Mesh ( output )
fix_random_seed: Boolean ( input )

Technical information

Toolbox : Morphologist

User level : 0

Identifier : GreyWhiteSurface

File name : brainvisa/toolboxes/morphologist/processes/segmentationpipeline/components_obsolete/segmentation/GreyWhiteSurface.py

Supported file formats :

mri_corrected :
GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image
histo_analysis :
Histo Analysis
left_grey_white :
GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image
right_grey_white :
GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image
left_hemi_cortex :
GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image
right_hemi_cortex :
GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image
left_white_mesh :
TRI mesh, PLY mesh, MESH mesh, GIFTI file, MNI OBJ mesh
right_white_mesh :
TRI mesh, PLY mesh, MESH mesh, GIFTI file, MNI OBJ mesh