Masque du cerveau

Crée un masque binaire d'un cerveau à partir d'une IRM

Paramètres

t1mri_nobias: IRM T1 Biais Corrigé ( entrée )

histo_analysis: Analyse d'histogramme ( entrée )

variance: T1 MRI Variance ( entrée )

edges: T1 MRI Edges ( entrée )

white_ridges: T1 MRI White Matter Ridges ( optional, entrée )

commissure_coordinates: Commissure coordinates ( optional, entrée )

lesion_mask: Lesion Mask ( optional, entrée )

variant: Choice ( input )

erosion_size: OpenChoice ( input )

visu: Choice ( input )

layer: Choice ( input )

first_slice: Entier ( input )

last_slice: Entier ( input )

brain_mask: T1 Brain Mask ( sortie )

fix_random_seed: Booléen ( input )

Informations techniques

Toolbox : Morphologist

Niveau d'utilisateur : 0

Identifiant : BrainSegmentation

Nom de fichier : brainvisa/toolboxes/morphologist/processes/segmentationpipeline/components/BrainSegmentation.py

Supported file formats :

t1mri_nobias :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

histo_analysis :

Analyse d'histogramme

variance :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

edges :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

white_ridges :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

commissure_coordinates :

Commissure coordinates

lesion_mask :

GIS image, VIDA image, NIFTI-1 image, MINC image, gz compressed MINC image, DICOM image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, TIFF(.tif) image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image

brain_mask :

GIS image, VIDA image, NIFTI-1 image, MINC image, TIFF image, XBM image, PBM image, PGM image, BMP image, XPM image, PPM image, gz compressed NIFTI-1 image, ECAT i image, PNG image, JPEG image, MNG image, GIF image, SPM image, ECAT v image