Anatomist : user manual

List of Figures

1.1. Anatomist control window

1.2. Visualize and handle a volume with Anatomist

3.1. Application tab

3.2. Default referentials configuration

3.3. Linked cursortab

3.4. Windows tab

3.5. Control window tab

3.6. Volumes tab

3.7. OpenGL tab

3.8. Preferences validation

4.1. 3D window

4.2. Oblique window

4.3. Axial window (2D)

4.4. 4 views block

5.1. Palette window

6.1. Default control keyboard shortcuts

6.2. Selection control keyboard shortcuts

6.3. Graph "annotation" mode

6.4. Oblique view control keyboard shortcuts

6.5. Flight simulator control keyboard shortcut.

6.6. Transformation control keyboard shortcuts

6.7. ROI drawing control keyboard shortcut

6.8. Threshold ROI drawing keyboard shortcuts

6.9. ROI design by discriminating analysis keyboard shortcuts

6.10. ROI drawing mode by label selection keyboard shortcuts

6.11. Mesh cutting control keyborad shortcut

6.12. Fold split control keyborad shortcuts

7.1. Superimposing an anatomy and regions of interest

7.2. Superimposing hemispheres meshes and head mesh

7.3. Fusion type

7.4. Fusion control

7.5. Example of a linear fusion between two 3D volumes

8.1. Coordinates in mm / coordinates in voxel

8.2. Example of a transformation .trm file

8.3. Modifying the referential of a window (1)

8.4. Modifying the referential of a window (2)

8.5. Loading a transformation between an anatomical volume and a functional volume.

9.1. Warning message when volume's and graph's voxels size are different.

9.2. ROI management interface

9.3. Paint tab

9.4. Mathematical morphology tab

9.5. Connectivity threshold tab

9.6. Image of labels (displayed in radiological convention)

11.1. Graph parameters window

G.1. Automatic recognition of sulci for subject A, external side (BrainVISA process Sulci => morphometry => automatic recognition )

G.2. Automatic recognition of sulci for subject A, intern (BrainVISA process Sulci => morphometry => automatic recognition )