The BrainVISA tutorial
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The BrainVISA tutorial
Table of Contents
1. Introduction
2. General features
Quick start
The log window
View the log window
Save the log file
Open a log file
Configuration
Manage bookmarks
Add a database
3. T1 MRI data processing: Morphologist
Introduction
Application: subject01
STEP 1 : Data importation
STEP 2: AC/PC spotting
STEP 3 : Morphologist pipeline
STEP 4 : Automatic sulci recognition
STEP 5 : Morphometry statistics
STEP 6 : Inflating cortical surface
Processing several subjects : subject02 and subject03
Import several images
Anatomical pipeline iteration
Automatic sulci recognition iteration
Sulci descriptors comparison
4. Diffusion data processing
Introduction
Application: subject01
5. Histological data processing
6. Parallel computing with Soma-workflow
Distributing a Morphologist iteration on a multi-core machine
Using Soma-workflow graphical user interface
7. Other tools
.mat to .trm conversion
List of Figures
3.1.
T1 MRI importation
3.2.
Prepare subject for Anatomical Pipeline
3.3.
Morphologist pipeline
3.4.
Sulci recognition
3.5.
Morphometry statistics on sulci
3.6.
Inflate cortical surface
3.7.
Import T1 MRI Iteration
3.8.
Anatomical pipeline Iteration
3.9.
Sulci recognition
3.10.
Labels selector window
4.1.
Diffusion data importation
4.2.
Diffusion model pipeline
4.3.
Fascicles Tracking Pipeline
4.4.
Diffusion Bundles Transformation
4.5.
Diffusion Bundles Analysis
4.6.
Show scalar features
6.1.
Soma-workflow GUI
7.1.
.mat to .trm conversion