Table of Contents
- 1. Foreward
- 2. Introduction to Anatomist
- 3. Basic level
- 4. Handling referentials and transformations
- 5. Handling regions of interest and sulci graphs
- Draw regions of interest (graph of ROIs)
- Display a graph of ROI
- Display a meshed graph of ROI
- Display only selected nodes of a sulci graph
- Change the name attribute of a graph node
- Copy label values between sulci graph nodes
- Nomenclature and graph
- SULCI GRAPH: copy the label values to name values
- Surface paint module
- Extraction and merging of sulci meshed (from sulci graph) and fusion between them
- 6. Combining objects
-
Fusion a volume with itself -
Fusion between a cortical surface mesh and an activation map 
Fusion between an inflated cortical surface mesh and an activation map
- Extract a texture
Fusion between an inflated cortical surface mesh and a texture
Multitexture : Inflated cortical surface mesh with an activation map and a curvature texture-
Fusion Mesh cut by a plane -
Mesh cut by a fusion between an anatomical MRI and an activation map -
Volume Rendering
-
Fusion a volume with itself across many planes 
Handle several cutting planes
-
- 7. Save Anatomist session
- 8. AnaSimpleViewer: A simplified version of Anatomist
- 9. Programming with Anatomist in Python language
- Description of the API
- Implementation
- Using the API
- Run Anatomist
- Load an object
- View an object
- Windows block
- Move the cursor
- Camera
- View header information
- Change the color palette
- View meshes
- Superimposing
- Change mesh material
- Fusion between 2 volumes
- Load a transformation
- Load an existing referential
- Load referential information from file header
- Display a ROI graph
- Sending a command to Anatomist
- Using direct implementation
List of Figures
- 2.1. Anatomist control window
- 3.1. View of a T1 MRI in an axial window.
- 3.2. 4 views block
- 3.3. Read header information.
- 3.4. Color Palette
- 3.5. Gradient Palette
- 3.6. View of white matter meshes in 3D window.
- 3.7. Change the mesh material.
- 3.8. Fusion window.
- 3.9. Fusion volume/volume.
- 4.1. Fusion between anatomical MRI of 2 subjects
- 4.2. Anatomical MRI of 2 subjects in a common referential
- 4.3. Before loading referential
- 4.4. After loading referential
- 4.5. Fusion between an activation map and a T1 MRI
- 5.1. Surface paint window
- 6.1. FusionSliceMethod: cut a volume across itself
- 6.2. After loading referentials
- 6.3. Fusion between a cortical surface mesh and an activation map
- 6.4. Fusion between an inflated cortical surface mesh and an activation map.
- 6.5. Fusion between an inflated cortical surface mesh and a texture
- 6.6. FusionSliceMethod: cut a volume across many planes
- 6.7. Handle several cutting planes
- 8.1. Anatomist Simple Viewer user interface
- 8.2. Visualizing several images with AnaSimpleViewer
List of Tables
- 4.1. minf/aimsrc files